Symbiodinium
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Contents
Description
- Symbiodinium is a genus of phototrophic, peridin-containing dinoflagellates that live as endosymbionts (zooxanthellae) in a wide variety of tropical marine invertebrates. Symbiodinium is responsible for the majority of primary production in coral reefs and found in a mutualistic symbiosis with multiple animal phyla. The genus Symbiodinium encompasses eight lineages (clades A–H), and multiple sub-clade types. Symbiodinium in clades A, B, C, and D are most commonly associated with metazoan hosts while clades C, D, F, G, and H with large soritid foraminifera[1][2].
- Common Name: Zoox, Zooxanthellae
- NCBI Taxonomy
Abiotic Stress
Internal Control Genes
| Gene Symbol | Gene Name | Application Scope | Accession Number | Primers (5'-3') [Forward/Reverse] |
Size [bp] | Tm [℃] | Detection |
|---|---|---|---|---|---|---|---|
| Rp-S4 [1] | Ribosomal protein S4 |
|
EH036413 |
|
101 | 58~59 | SYBR |
| SAM[1] | S-adenosyl-L-methionine synthetase |
|
EH036622 |
|
101 | 59 | SYBR |
Molecular Types
- mRNA
Evaluation Methods
Contact
- Name: Ove Hoegh-Guldberg
- Email: n.rosic@uq.edu.au
- Institution: Global Change Institute, University of Queensland, St. Lucia, Brisbane 4072( QLD, Australia
Citation Statistics
Cited by 49 (Based on Google Scholar [2017-09-01])
Abiotic Stress
Internal Control Genes
| Gene Symbol | Gene Name | Application Scope | Accession Number | Primers (5'-3') [Forward/Reverse] |
Size [bp] | Tm [℃] | Detection |
|---|---|---|---|---|---|---|---|
| pcna[3] | Proliferating cell nuclear antigen |
|
NA |
|
113 | 60 | SYBR |
| ps1[3] | Photosystem I (subunit III) |
|
NA |
|
136 | 60 | SYBR |
Molecular Types
- mRNA
Evaluation Methods
- geNorm method && Related Reference
- NormFinder method && Related Reference
- BestKeeper method && Related Reference
Contact
- Name: Chiahsin Lin
- Email: chiahsin@nmmba.gov.tw
- Institution: Institute of Marine Biology, National Dong Hwa University
Citation Statistics
Cited by 0 (Based on Google Scholar [2017-08-10])
References
- ↑ 1.0 1.1 1.2 Rosic N N, Pernice M, Rodriguez-Lanetty M, et al. Validation of housekeeping genes for gene expression studies in Symbiodinium exposed to thermal and light stress[J]. Marine biotechnology, 2011, 13(3): 355-365.
- ↑ Pochon X, Gates RD. A new Symbiodinium clade (Dinophyceae) from soritid foraminifera in Hawai'i. Mol Phylogenet Evol. 2010 Jul;56(1):492-7. doi: 10.1016/j.ympev.2010.03.040. Epub 2010 Apr 4. PMID: 20371383 DOI: 10.1016/j.ympev.2010.03.040.
- ↑ 3.0 3.1 Chong, Gabriella, et al. "Validation of reference genes for cryopreservation studies with the gorgonian coral endosymbiont Symbiodinium." Scientific reports 7 (2017): srep39396.
