Difference between revisions of "Downloads"

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=='''ICG Sequence Download'''==
 
=='''ICG Sequence Download'''==
* Sequence Set of the experimental verified internal control genes ( in '''FASTA Format''') are provided for users to freely [ftp://download.big.ac.cn/bigd/GEN/ICG/ '''Download'''].   
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* To promote the study on identification and characterization of potential internal control gene candidates from newly sequenced genomes or transcriptomes, Sequence Set of the experimental verified internal control genes ( in '''FASTA Format''') are provided for users to freely [ftp://download.big.ac.cn/bigd/GEN/ICG/ '''Download'''].   
 
===Readme===
 
===Readme===
 
* Considering the accuracy and completeness for your next-stage work, only the sequences with clear sources (e.g., NCBI accession number) were obtained from the related peer-reviewed literature.
 
* Considering the accuracy and completeness for your next-stage work, only the sequences with clear sources (e.g., NCBI accession number) were obtained from the related peer-reviewed literature.

Revision as of 02:07, 16 August 2017

ICG Sequence Download

  • To promote the study on identification and characterization of potential internal control gene candidates from newly sequenced genomes or transcriptomes, Sequence Set of the experimental verified internal control genes ( in FASTA Format) are provided for users to freely Download.

Readme

  • Considering the accuracy and completeness for your next-stage work, only the sequences with clear sources (e.g., NCBI accession number) were obtained from the related peer-reviewed literature.
  • You can get access to the sequences directly with linux command (for example: wget ftp://download.big.ac.cn/bigd/GEN/ICG/ICG_V_1.fa).
  • The potential internal control gene candidates from the users' own data set are proposed to be identified through BLASTN search, against the curated sequences with customizable parameters, for example:
(a) Score value higher than 250;
(b) Identity value higher than 95%;
  • By the way, for primer design of potential identified internal control genes, an example of parameters for PRIMER 3.0 is as followings :
(a) Product size: 100-250 bp;
(b) Primer size: 19-25 bp;
(c) GC content : 45-55 %;
(d) Primer Tm : 56-62°C;