Gene:18S rRNA

Synonymous Genes

• 18S rRNA <=> 18S,18S rRNA

Experimental Validated ICGs

Species	Gene Synonymous	Application scenarios	Publication	Year
Actinidia chinensis	18S ribosomal RNA	Different Developmental Stages & Tissues	Identification and validation of reference genes for accurate normalization of real-time quantitative PCR data in kiwifruit	2016
Ammopiptanthus mongolicus	Ribosomal RNA 18S	Abiotic Stresses	Reference gene selection for qPCR in Ammopiptanthus mongolicus under abiotic stresses and expression analysis of seven ROS-scavenging enzyme genes	2012
Aphis gossypii	18S ribosomal	Different Developmental Stages & Geographical Populations	Identification and Validation of Reference Genes for the Normalization of Gene Expression Data in qRT-PCR Analysis in Aphis gossypii (Hemiptera: Aphididae).	2016
Callithrix jacchus	18S ribosomal RNA	Different Tissues	Selection of suitable reference genes for mRNA quantification studies using common marmoset tissues	2013
Citrus clementina	18S ribosomal RNA	Different Genotypes	Selection of reference genes for quantitative real-time RT-PCR analysis in citrus. Molecular biology reports	2012
Citrus maxima	18S ribosomal RNA	Different Genotypes	Selection of reference genes for quantitative real-time RT-PCR analysis in citrus	2012
Citrus sinensis	18S ribosomal RNA	Different Genotypes	Selection of reference genes for quantitative real-time RT-PCR analysis in citrus	2012
Ctenopharyngodon idella	18S ribosomal RNA	Tissues & Cell Culture	Evaluation of internal control genes for qRT-PCR normalization in tissues and cell culture for antiviral studies of grass carp (Ctenopharyngodon idella)	2011
Drosophila melanogaster	Small ribosomal submit	Physiological Responses	Evaluation of potential reference genes for reverse transcription-qPCR studies of physiological responses in Drosophila melanogaster	2011
Eucalyptus grandis	RNA ribosomal 18S	In Vitro Adventitious Rooting	Reference gene selection for quantitative reverse transcription-polymerase chain reaction normalization during in vitro adventitious rooting in Eucalyptus globulus Labill	2010
Hibiscus cannabinus	18S rRNA	Salinity & Drought Stress	Reference genes selection for transcript normalization in kenaf (Hibiscus cannabinus L.) under salinity and drought stress	2015
Lucilia cuprina	18S rRNA	Different Developmental Stages	Evaluation of reference genes for real-time PCR quantification of gene expression in the Australian sheep blowfly, Lucilia cuprina	2010
Mus musculus	18S rRNA	Preimplantation Embryos	Evaluation of reference genes in mouse preimplantation embryos for gene expression studies using real-time quantitative RT-PCR (RT-qPCR)	2014
Mus musculus	18S Ribosomal RNA	Obesity Model	Reference genes for real-time PCR quantification of messenger RNAs and microRNAs in mouse model of obesity	2014
Oreochromis niloticus	18S ribosomal RNA	Different Tissues & Bacterial Infection	Evaluation of reference genes for quantitative real-time RT-PCR analysis of gene expression in Nile tilapia (Oreochromis niloticus)	2013
Oryctolagus cuniculus	18S Ribosomal RNA	Cartilage Tissue Injury & Repair	Selection of suitable reference genes for normalization of quantitative real-time PCR in cartilage tissue injury and repair in rabbits	2012
Pandora neoaphidis	18S ribosomal RNA	Different Developmental Stages & Nutritional Conditions	Selection of reference genes for expression analysis in the entomophthoralean fungus Pandora neoaphidis	2016
Pecten maximus	18S ribosomal RNA	Different Tissues	Selection of reference genes for quantitative RT-PCR studies on the gonad of the bivalve mollusc Pecten maximus L	2012
Posidonia oceanica	Ribosomal RNA 18S	Abiotic Stress	Reference genes assessment for the seagrass Posidonia oceanica in different salinity, pH and light conditions	2012
Rhodnius prolixus	18S ribosomal RNA	Different Experimental Conditions	Validation of reference genes for expression analysis in the salivary gland and the intestine of Rhodnius prolixus (Hemiptera, Reduviidae) under different experimental conditions by quantitative real-time PCR	2012
Sesamia inferens	18S ribosomal RNA	Different Tissues & Developmental Stages	Exploring valid reference genes for quantitative real-time PCR analysis in Sesamia inferens (Lepidoptera: Noctuidae)	2015
Sus scrofa	18S ribosomal RNA	Oocytes & Preimplantation Embryos	Validation of reference genes for quantitative RT-PCR studies in porcine oocytes and preimplantation embryos	2007
Triticum aestivum	18S rRNA	Rust Infection	Reference gene selection for qPCR gene expression analysis of rust-infected wheat	2013
Tuber melanosporum	18S ribosomal RNA	Different Developmental Stages	Validation of reference genes for quantitative real-time PCR in Perigord black truffle (Tuber melanosporum) developmental stages	2015
Ulva linza	18S rRNA	Different Experimental Conditions	The validity of a reference gene is highly dependent on the experimental conditions in green alga Ulva linza	2012
Vigna mungo	18S rRNA	Biotic and Abiotic stress	Defining reference genes for qPCR normalization to study biotic and abiotic stress responses in Vigna mungo	2013
Volvox carteri	18S ribosomal RNA	Developmental Stages & Stress Treatments	Validation of reference genes for quantitative gene expression studies in Volvox carteri using real-time RT-PCR. Molecular biology reports	2013

Featured Sequence

The Sequence of Lucilia cuprina 18S rRNA is displayed as example. 000001 CTGCTTGATC CTGCCAGTAG TTATATGCTT GTCTCAAAGG TTAAGCCATG CATGTCTAAG TACACACGAA 000070 000071 TTAAAAGTGA AACCGCAAAA GGCTCATTAT ATCAGTTATG GTTCCTTAGA TCGTTAACAG TTACTTGGAT 000140 000141 AACTGTGGTA ATTCTAGAGC TAATACATGC AATATAAATA CGGACCTTTG GGACGTATGC TTTTATTAGG 000210 000211 CTAAAACCAA GCGATCGCAA GATCGTTATT ATGGTTGAAC TCTAGATAAC TTGCTGATCG TATGGTCTTG 000280 000281 TACCGACGAC AGATCTTTCA AATGTCTGCC CTATCAACTT TTGATGGTAG TATCTAGGAC TACCATGGTT 000350 000351 GCGACGGGTA ACGGGGAATC AGGGTTCGAT TCCGGTGAGG GAGCCTGAGA AACGGCTACC ACATCTAAGG 000420 000421 AAGGCAGCAG GCGCGTAAAT TACCCACTCC CAGCTCGGGG AGGTAGTGAC GAAAAATAAC AATACAGGAC 000490 000491 TCATATTAGA GGCCCTGTAA TTGGAATGAG TACACTTTAA ATCCTTTAAC AAGGACCTAT TGGAGGGCAA 000560 000561 GTCTGGTGCC AGCAGCCGCG GTAACTCCAG CTCCAATAGC GTATATTAAA GTTGTTGCGG TTAAAACGTT 000630 000631 CGTAGTTGAA CTTGTGCTTC ATACGGGTAG TACAACTATA ATTGTAGTTT GTACTGTACC TTATGCATGT 000700 000701 AAGCGTATTA CCGGTGGAGT TCTTATATGT ATTAAATACT TGTATTTGTG CATATTCCTC CTATTTAAAC 000770 000771 CTGCTTCAGT GCTCTTCATC GAGTGTTGTT GTGGGCCGGT ACAATTACTT TGAACAAATT AGAGTGTTTA 000840 000841 AAGCAGGCTC CAAATGCCTG AATATTTTGT GCATGGAATA ATGAAATAAG ACCTCTGTTC TACTTTCATT 000910 000911 GGTTTTTAGA TCAAGAGGTA ATGATTAATA GAAGCAGTTT GGGGGCATTA GTATTACNAC GCGAGAGGTG 000980 000981 AAATTCTTGG ACCGTCGTAA GGACTAACTT AAGCGAAAGC ATTTGCCAAA GATGTTTTCA TTAATCAAGA 001050 001051 ACGAAAGTTA GAGGTTCGAA GGCGATCAGA TACCGCCCTA GTTCTAACCA TAAACGATGC CAGCTAGCAA 001120 001121 TTGGGTGTAG CTACTATCAT GGCTCTCTCA GTCGCTTCCC GGGAAACCAA AGCTTTTGGG CTCCGGGGGA 001190 001191 AGTATGGTTG CAAAGCTGAA ACTTAAAGGA ATTGACGGAA GGGCACCACC AGGAGTGGAG CCTGCGGCTT 001260 001261 AATTTGACTC AACACGGGAA AACTTACCAG GTCCGAACAT AAGTGTGTAA GACAGATTGA TAGCTCTTTC 001330 001331 TCGAATCTAT GGGTGGTGGT GCATGGCCGT TCTTAGTTCG TGGAGTGATT TGTCTGGTTA ATTCCGATAA 001400 001401 CGAACGAGAC TCAAATATAT TAAATAGATG CTTTCAGGAT TATGGTGTTT GAAGCTTTTG TAGCCTTCAT 001470 001471 TCATGAGTGC AGTAAAATGT GTGAGTGTTT GAATGTGTTT ATGAAAGTGG AGCCGTACCT GTTGGTTTGT 001540 001541 CCCATTATAA GGACACTAGC TTCTTAAATG GACAAATTGC GTCTAGCAAT AATGAGATTG AGCAATAACA 001610 001611 GGTCTGTGAT GCCCTTAGAT GTCCTGGGCT GCACGCGCGC TACAATGAAA GTATCAACGT GTATTTCCTA 001680 001681 GACCGAGAGG TCCGGGTAAA CCGCTGAACC ACTTTCATGC TTGGGATTGT GAACTGAAAC TGTTCACATG 001750 001751 AACTTGGAAT TCCCAGTAAG TGTGAGTCAT TAACTCGCAT TGATTACGTC CCTGCCCTTA TACTCACCGC 001820 001821 CCGTCGCTAC TACCGATTG

External Links

• NCBI COnserved Protein Domain Family
• WikiPedia
• Pfam