View source for Gene:Cyclophilin

=='''''Synonymous Genes'''''==
* Cyclophilin <=> Cyc,CYP,GhCYP1,CYC1,PPIA

=='''''Experimental Validated ICGs'''''==
{|class="wikitable sortable" style="font-size:10pt; width:100%"
|-
! Species  
! Gene Synonymous  
! Application scenarios
! Publication
! Year
|-
|align="center"|[[Anthurium andraeanum]]
|align="center"|Cyclophilin 
||
*''Spathe Tissue''
||
*[http://www.sciencedirect.com/science/article/pii/S0304423813000605 Identification of reference genes for expression studies using quantitative RT-PCR in spathe tissue of Anthurium andraeanum (Hort.)]
|align="center"|2013
|-
|align="center"|[[Brassica rapa subsp. pekinensis]]
|align="center"|Cyclophilin 
||
*''Different Developmental Stages & Biotic Stress''
||
*[http://www.publish.csiro.au/FP/FP11246 Validation of reference genes for real-time quantitative PCR normalisation in non-heading Chinese cabbage]
|align="center"|2012
|-
|align="center"|[[Coffea arabica L.]]
|align="center"|Cyclophilin 
||
*''Different Genotypes & Abiotic Stress''
||
*[https://link.springer.com/article/10.1007/s11105-011-0382-6 Selection of Reference Genes for Normalizing Quantitative Real-Time PCR Gene Expression Data with Multiple Variables in Coffea spp]
|align="center"|2012
|-
|align="center"|[[Elaeis guineensis]]
|align="center"|Cyclophilin 
||
*''Abiotic Stress''
||
*[https://www.ncbi.nlm.nih.gov/pubmed/24862192 Analysis of multiple transcriptomes of the African oil palm (Elaeis guineensis) to identify reference genes for RT-qPCR]
|align="center"|2014
|-
|align="center"|[[Glycine max]]
|align="center"|Cyclophilin 
||
*''Biotic Stresses''
||
*[https://www.ncbi.nlm.nih.gov/pubmed/26244340 Recommended reference genes for quantitative PCR analysis in soybean have variable stabilities during diverse biotic stresses]
|align="center"|2015
|-
|align="center"|[[Gossypium hirsutum]]
|align="center"|Cydophilin 1 
||
*''Abiotic Stress''
||
*[https://www.ncbi.nlm.nih.gov/pubmed/23933278 Evaluation and selection of reliable reference genes for gene expression under abiotic stress in cotton (Gossypium hirsutum L.)]
|align="center"|2013
|-
|align="center"|[[Homo sapiens]]
|align="center"|Cytochrome c-1 
||
*''Glioma''
||
*[https://www.ncbi.nlm.nih.gov/pubmed/25862007 Selection of suitable reference genes for expression analysis in human glioma using RT-qPCR]
|align="center"|2015
|-
|align="center"|[[Homo sapiens]]
|align="center"|Peptidylprolyl isomerase A 
||
*''Epicardial Adipose Tissue''
||
*[https://www.ncbi.nlm.nih.gov/pubmed/22511915 Validation of reference genes for the relative quantification of gene expression in human epicardial adipose tissue]
|align="center"|2012
|-
|align="center"|[[Iris hybrid cultivar]]
|align="center"|Cyclophilin 
||
*''Abiotic Stress''
||
*[http://www.sciencedirect.com/science/article/pii/S0304423814003276 Validation of reference genes for RT-qPCR normalization in Iris. lactea var. chinensis leaves under different experimental conditions]
|align="center"|2014
|-
|align="center"|[[Lilium regale]]
|align="center"|Cycolphilin A 
||
*''Different Developmental Stages & Abiotic Stress''
||
*[https://www.ncbi.nlm.nih.gov/pubmed/27019788 Evaluation of putative reference genes for quantitative real-time PCR normalization in Lilium regale during development and under stress]
|align="center"|2016
|-
|align="center"|[[Panicum virgatum]]
|align="center"|Cyclophilin 5 
||
*''Different Tissues & Abiotic Stress''
||
*[https://www.ncbi.nlm.nih.gov/pubmed/24621568 Selection and validation of reference genes for gene expression analysis in switchgrass (Panicum virgatum) using quantitative real-time RT-PCR]
|align="center"|2014
|-
|align="center"|[[Rattus norvegicus]]
|align="center"|Cyclophilin A 
||
*''Asphyxial Cardiac Arrest Model''
||
*[https://www.ncbi.nlm.nih.gov/pubmed/18505597 Selection of reference genes for quantitative real-time PCR in a rat asphyxial cardiac arrest model]
|align="center"|2008
|-
|align="center"|[[Solanum lycopersicum]]
|align="center"|Cyclophilin (peptidyl-prolylcis–trans isomerase) 	
||
*''Viral Infection''
||
*[https://www.ncbi.nlm.nih.gov/pubmed/21029324 Evaluation of reference genes for quantitative reverseï¿½\transcription polymerase chain reaction normalization in infected tomato plants]
|align="center"|2010
|-
|align="center"|[[Valsa mali var. mali]]
|align="center"|Cyclophilin
||
*''Different Strains & Abiotic Stress Treatments''
||
*[https://www.ncbi.nlm.nih.gov/pubmed/23508400 Validation of reference genes for gene expression analysis in Valsa mali var. mali using real-time quantitative PCR]
|align="center"|2013
|-
|align="center"|[[Aspergillus niger]]
|align="center"|Cytochrome c oxidase subunit V 
||
*''Continuous Cultivation''
||
*[https://www.ncbi.nlm.nih.gov/pubmed/17868942 Selection of reference genes for normalisation of specific gene quantification data of Aspergillus niger]
|align="center"|2007
|-
|align="center"|[[Ipomoea batatas]]
|align="center"|Cytochrome c oxidase subunit Vc 
||
*''Abiotic Stress''
||
*[https://www.ncbi.nlm.nih.gov/pubmed/23251557 Stable internal reference genes for the normalization of real-time PCR in different sweetpotato cultivars subjected to abiotic stress conditions]
|align="center"|2012
|-
|align="center"|[[Callithrix jacchus]]
|align="center"|Peptidylprolyl isomerace (Cyclophilin) A 	
||
*''Different Tissues''
||
*[https://www.ncbi.nlm.nih.gov/pubmed/24068436 Selection of suitable reference genes for mRNA quantification studies using common marmoset tissues]
|align="center"|2013
|-
|align="center"|[[Capra hircus]]
|align="center"|Peptidylprolyl isomerase (Cyclophilin) B
||
*''Intramuscular Fat Deposition''
||
*[https://www.ncbi.nlm.nih.gov/pubmed/25794179 Selection of reference genes for gene expression studies related to intramuscular fat deposition in Capra hircus skeletal muscle]
|align="center"|2015
|-
|align="center"|[[Homo sapiens]]
|align="center"|Peptidylprolyl isomerase A, cydophilin A, romatase A 
||
*''Lung Cancer''
||
*[https://www.ncbi.nlm.nih.gov/pubmed/25573171 Identification of suitable reference genes for gene expression studies using quantitative polymerase chain reaction in lung cancer in vitro]
|align="center"|2015
|-
|align="center"|[[Homo sapiens]]
|align="center"|Peptidylprolyl isomerase (Cyclophilin) A 
||
*''Ovarian Cancer''
||
*[https://www.ncbi.nlm.nih.gov/pubmed/19622337 Identification of suitable reference genes for gene expression studies of human serous ovarian cancer by real-time polymerase chain reaction]
|align="center"|2009
|-
|align="center"|[[Homo sapiens]]
|align="center"|Peptidylprolyl isomerase (Cyclophilin) A
||
*''Endometrioid Endometrial Carcinoma Tissues''
||
*[https://www.ncbi.nlm.nih.gov/pubmed/25473950 Identification of optimal reference genes for gene expression normalization in a wide cohort of endometrioid endometrial carcinoma tissues]
|align="center"|2014
|-
|align="center"|[[Homo sapiens]]
|align="center"|Peptidylprolyl isomerase (Cyclophilin) A  
||
*''Clear Cell Renal Cell Carcinoma''
||
*[https://www.ncbi.nlm.nih.gov/pubmed/24885929 Validation of housekeeping gene and impact on normalized gene expression in clear cell renal cell carcinoma: critical reassessment of YBX3/ZONAB/CSDA expression]
|align="center"|2014
|-
|align="center"|[[Mus musculus]]
|align="center"|Peptidylprolyl isomerase (Cyclophilin) B
||
*''Different Tissues & Ageing''
||
*[https://www.ncbi.nlm.nih.gov/pubmed/25663136 Normalization of Reverse Transcription Quantitative PCR Data During Ageing in Distinct Cerebral Structures. Molecular neurobiology]
|align="center"|2016
|-
|align="center"|[[Mus musculus]]
|align="center"|Peptidylprolyl isomerase (Cyclophilin) A 
||
*''Testis Development''
||
*[https://www.ncbi.nlm.nih.gov/pubmed/24952483 Identification and validation of suitable reference genes for RT-qPCR analysis in mouse testis development]
|align="center"|2014
|-
|align="center"|[[Mus musculus]]
|align="center"|Peptidylprolyl isomerase (Cyclophilin) B 
||
*''Intestinal Epithelial Cells''
||
*[https://www.ncbi.nlm.nih.gov/pubmed/23292893 Defining suitable reference genes for RT-qPCR analysis on intestinal epithelial cells]
|align="center"|2013
|-
|align="center"|[[Rattus norvegicus]]
|align="center"|Peptidylprolyl isomerase B, Peptidylprolyl cistrans isomerase (Cyclophilin) A 
||
*''Intestinal Epithelial Cells''
||
*[https://www.ncbi.nlm.nih.gov/pubmed/23292893 Defining suitable reference genes for RT-qPCR analysis on intestinal epithelial cells]
|align="center"|2013
|-
|align="center"|[[Sus scrofa]]
|align="center"|Peptidylprolyl isomerase (Cyclophilin) A 
||
*''Spermatozoa Cryopreservation''
||
*[https://www.ncbi.nlm.nih.gov/pubmed/24440873 Selection of optimal reference genes for quantitative RT-PCR studies of boar spermatozoa cryopreservation]
|align="center"|2014
|-
|align="center"|[[Sus scrofa]]
|align="center"|Peptidylprolyl isomerase (Cyclophilin) A 
||
*''Gastrointestinal Tissues''
||
*[http://www.sciencedirect.com/science/article/pii/S1871141310002325 Selection of stable reference genes for quantitative real-time PCR in porcine gastrointestinal tissues]
|align="center"|2010
|}

=='''Featured Sequence'''==
{{DNA|
DNA = <dnaseqindica>GGGGCCGAACGTGGTATAAAAGGGGCGGGAGGCCAGGCTCGTGCCGTTTTGCAGACGCCACCGCCGAGGA
AAACCGTGTACTATTAGCCATGGTCAACCCCACCGTGTTCTTCGACATTGCCGTCGACGGCGAGCCCTTG
GGCCGCGTCTCCTTTGAGCTGTTTGCAGACAAGGTCCCAAAGACAGCAGAAAATTTTCGTGCTCTGAGCA
CTGGAGAGAAAGGATTTGGTTATAAGGGTTCCTGCTTTCACAGAATTATTCCAGGGTTTATGTGTCAGGG
TGGTGACTTCACACGCCATAATGGCACTGGTGGCAAGTCCATCTATGGGGAGAAATTTGAAGATGAGAAC
TTCATCCTAAAGCATACGGGTCCTGGCATCTTGTCCATGGCAAATGCTGGACCCAACACAAATGGTTCCC
AGTTTTTCATCTGCACTGCCAAGACTGAGTGGTTGGATGGCAAGCATGTGGTGTTTGGCAAAGTGAAAGA
AGGCATGAATATTGTGGAGGCCATGGAGCGCTTTGGGTCCAGGAATGGCAAGACCAGCAAGAAGATCACC
ATTGCTGACTGTGGACAACTCGAATAAGTTTGACTTGTGTTTTATCTTAACCACCAGATCATTCCTTCTG
TAGCTCAGGAGAGCACCCCTCCACCCCATTTGCTCGCAGTATCCTAGAATCTTTGTGCTCTCGCTGCAGT
TCCCTTTGGGTTCCATGTTTTCCTTGTTCCCTCCCATGCCTAGCTGGATTGCAGAGTTAAGTTTATGATT
ATGAAATAAAAACTAAATAACAATTGTCCTCGTTTGAGTTAAGAGTGTTGATGTAGGCTTTATTTTAAGC
AGTAATGGGTTACTTCTGAAACATCACTTGTTTGCTTAATTCTACACAGTACTTAGATTTTTTTTACTTT
CCAGTCCCAGGAAGTGTCAATGTTTGTTGAGTGGAATATTGAAAATGTAGGCAGCAACTGGGCATGGTGG
CTCACTGTCTGTAATGTATTACCTGAGGCAGAAGACCACCTGAGGGTAGGAGTCAAGATCAGCCTGGGCA
ACATAGTGAGACGCTGTCTCTACAAAAAATAATTAGCCTGGCCTGGTGGTGCATGCCTAGTCCTAGCTGA
TCTGGAGGCTGACGTGGGAGGATTGCTTGAGCCTAGAGTGAGCTATTATCATGCCACTGTACAGCCTGGG
TGTTCACAGATCTTGTGTCTCAAAGGTAGGCAGAGGCAGGAAAAGCAAGGAGCCAGAATTAAGAGGTTGG
GTCAGTCTGCAGTGAGTTCATGCATTTAGAGGTGTTCTTCAAGATGACTAATGTCAAAAATTGAGACATC
TGTTGCGGTTTTTTTTTTTTTTTTTTCCCCTGGAATGCAGTGGCGTGATCTCAGCTCACTGCAGCCTCCG
CCTCCTGGGTTCAAGTGATTCTAGTGCCTCAGCCTCCTGAGTAGCTGGGATAATGGGCGTGTGCCACCAT
GCCCAGCTAATTTTTGTATTTTTAGTATAGATGGGGTTTCATCATTTTGACCAGGCTGGTCTCAAACTCT
TGACCTCAGCTGATGCGCCTGCCTTGGCCTCCCAAACTGCTGAGATTACAGATGTGAGCCACCGCACCCT
ACCTCATTTTCTGTAACAAAGCTAAGCTTGAACACTGTTGATGTTCTTGAGGGAAGCATATTGGGCTTTA
GGCTGTAGGTCAAGTTTATACATCTTAATTATGGTGGAATTCCTATGTAGAGTCTAAAAAGCCAGGTACT
TGGTGCTACAGTCAGTCTCCCTGCAGAGGGTTAAGGCGCAGACTACCTGCAGTGAGGAGGTACTGCTTGT
AGCATATAGAGCCTCTCCCTAGCTTTGGTTATGGAGGCTTTGAGGTTTTGCAAACCTGACCAATTTAAGC
CATAAGATCTGGTCAAAGGGATACCCTTCCCACTAAGGACTTGGTTTCTCAGGAAATTATATGTACAGTG
CTTGCTGGCAGTTAGATGTCAGGACAATCTAAGCTGAGAAAACCCCTTCTCTGCCCACCTTAACAGACCT
CTAGGGTTCTTAACCCAGCAATCAAGTTTGCCTATCCTAGAGGTGGCGGATTTGATCATTTGGTGTGTTG
GGCAATTTTTGTTTTACTGTCTGGTTCCTTCTGCGTGAATTACCACCACCACCACTTGTGCATCTCAGTC
TTGTGTGTTGTCTGGTTACGTATTCCCTGGGTGATACCATTCAATGTCTTAATGTACTTGTGGCTCAGAC
CTGAGTGCAAGGTGGAAATAAACATCAAACATCTTTTCATTATCCCTA
</dnaseqindica>|
SOURCE = '''''Homo sapiens''''' Cyclophilin|
}}

=='''Conserved Domains '''==
{{Str|
SOURCE = '''''Homo sapiens''''' Cyclophilin|
Str= [[File:Cyclophilin.png|center|770px|link=http://icg.big.ac.cn/index.php/Gene:Cyclophilin]]|
}}

=='''''External Links'''''==
* [https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?ascbin=8&maxaln=10&seltype=2&uid=cd01926 Conserved Protein Domain Family ]
* [https://en.wikipedia.org/wiki/Cyclophilin WikiPedia]
* [http://pfam.xfam.org/family/PF00160 Pfam]