Gene:Cyclophilin

Synonymous Genes

• Cyclophilin <=> Cyc,CYP,GhCYP1,CYC1,PPIA

Experimental Validated ICGs

Species	Gene Synonymous	Application scenarios	Publication	Year
Anthurium andraeanum	Cyclophilin	Spathe Tissue	Identification of reference genes for expression studies using quantitative RT-PCR in spathe tissue of Anthurium andraeanum (Hort.)	2013
Brassica rapa subsp. pekinensis	Cyclophilin	Different Developmental Stages & Biotic Stress	Validation of reference genes for real-time quantitative PCR normalisation in non-heading Chinese cabbage	2012
Coffea arabica L.	Cyclophilin	Different Genotypes & Abiotic Stress	Selection of Reference Genes for Normalizing Quantitative Real-Time PCR Gene Expression Data with Multiple Variables in Coffea spp	2012
Elaeis guineensis	Cyclophilin	Abiotic Stress	Analysis of multiple transcriptomes of the African oil palm (Elaeis guineensis) to identify reference genes for RT-qPCR	2014
Glycine max	Cyclophilin	Biotic Stresses	Recommended reference genes for quantitative PCR analysis in soybean have variable stabilities during diverse biotic stresses	2015
Gossypium hirsutum	Cydophilin 1	Abiotic Stress	Evaluation and selection of reliable reference genes for gene expression under abiotic stress in cotton (Gossypium hirsutum L.)	2013
Homo sapiens	Cytochrome c-1	Glioma	Selection of suitable reference genes for expression analysis in human glioma using RT-qPCR	2015
Homo sapiens	Peptidylprolyl isomerase A	Epicardial Adipose Tissue	Validation of reference genes for the relative quantification of gene expression in human epicardial adipose tissue	2012
Iris hybrid cultivar	Cyclophilin	Abiotic Stress	Validation of reference genes for RT-qPCR normalization in Iris. lactea var. chinensis leaves under different experimental conditions	2014
Lilium regale	Cycolphilin A	Different Developmental Stages & Abiotic Stress	Evaluation of putative reference genes for quantitative real-time PCR normalization in Lilium regale during development and under stress	2016
Panicum virgatum	Cyclophilin 5	Different Tissues & Abiotic Stress	Selection and validation of reference genes for gene expression analysis in switchgrass (Panicum virgatum) using quantitative real-time RT-PCR	2014
Rattus norvegicus	Cyclophilin A	Asphyxial Cardiac Arrest Model	Selection of reference genes for quantitative real-time PCR in a rat asphyxial cardiac arrest model	2008
Solanum lycopersicum	Cyclophilin (peptidyl-prolylcis–trans isomerase)	Viral Infection	Evaluation of reference genes for quantitative reverse�\transcription polymerase chain reaction normalization in infected tomato plants	2010
Valsa mali var. mali	Cyclophilin	Different Strains & Abiotic Stress Treatments	Validation of reference genes for gene expression analysis in Valsa mali var. mali using real-time quantitative PCR	2013
Aspergillus niger	Cytochrome c oxidase subunit V	Continuous Cultivation	Selection of reference genes for normalisation of specific gene quantification data of Aspergillus niger	2007
Ipomoea batatas	Cytochrome c oxidase subunit Vc	Abiotic Stress	Stable internal reference genes for the normalization of real-time PCR in different sweetpotato cultivars subjected to abiotic stress conditions	2012
Callithrix jacchus	Peptidylprolyl isomerace (Cyclophilin) A	Different Tissues	Selection of suitable reference genes for mRNA quantification studies using common marmoset tissues	2013
Capra hircus	Peptidylprolyl isomerase (Cyclophilin) B	Intramuscular Fat Deposition	Selection of reference genes for gene expression studies related to intramuscular fat deposition in Capra hircus skeletal muscle	2015
Homo sapiens	Peptidylprolyl isomerase A, cydophilin A, romatase A	Lung Cancer	Identification of suitable reference genes for gene expression studies using quantitative polymerase chain reaction in lung cancer in vitro	2015
Homo sapiens	Peptidylprolyl isomerase (Cyclophilin) A	Ovarian Cancer	Identification of suitable reference genes for gene expression studies of human serous ovarian cancer by real-time polymerase chain reaction	2009
Homo sapiens	Peptidylprolyl isomerase (Cyclophilin) A	Endometrioid Endometrial Carcinoma Tissues	Identification of optimal reference genes for gene expression normalization in a wide cohort of endometrioid endometrial carcinoma tissues	2014
Homo sapiens	Peptidylprolyl isomerase (Cyclophilin) A	Clear Cell Renal Cell Carcinoma	Validation of housekeeping gene and impact on normalized gene expression in clear cell renal cell carcinoma: critical reassessment of YBX3/ZONAB/CSDA expression	2014
Mus musculus	Peptidylprolyl isomerase (Cyclophilin) B	Different Tissues & Ageing	Normalization of Reverse Transcription Quantitative PCR Data During Ageing in Distinct Cerebral Structures. Molecular neurobiology	2016
Mus musculus	Peptidylprolyl isomerase (Cyclophilin) A	Testis Development	Identification and validation of suitable reference genes for RT-qPCR analysis in mouse testis development	2014
Mus musculus	Peptidylprolyl isomerase (Cyclophilin) B	Intestinal Epithelial Cells	Defining suitable reference genes for RT-qPCR analysis on intestinal epithelial cells	2013
Rattus norvegicus	Peptidylprolyl isomerase B, Peptidylprolyl cistrans isomerase (Cyclophilin) A	Intestinal Epithelial Cells	Defining suitable reference genes for RT-qPCR analysis on intestinal epithelial cells	2013
Sus scrofa	Peptidylprolyl isomerase (Cyclophilin) A	Spermatozoa Cryopreservation	Selection of optimal reference genes for quantitative RT-PCR studies of boar spermatozoa cryopreservation	2014
Sus scrofa	Peptidylprolyl isomerase (Cyclophilin) A	Gastrointestinal Tissues	Selection of stable reference genes for quantitative real-time PCR in porcine gastrointestinal tissues	2010

Featured Sequence

The Sequence of Homo sapiens Cyclophilin is displayed as example. 000001 GGGGCCGAAC GTGGTATAAA AGGGGCGGGA GGCCAGGCTC GTGCCGTTTT GCAGACGCCA CCGCCGAGGA 000070 000071 AAACCGTGTA CTATTAGCCA TGGTCAACCC CACCGTGTTC TTCGACATTG CCGTCGACGG CGAGCCCTTG 000140 000141 GGCCGCGTCT CCTTTGAGCT GTTTGCAGAC AAGGTCCCAA AGACAGCAGA AAATTTTCGT GCTCTGAGCA 000210 000211 CTGGAGAGAA AGGATTTGGT TATAAGGGTT CCTGCTTTCA CAGAATTATT CCAGGGTTTA TGTGTCAGGG 000280 000281 TGGTGACTTC ACACGCCATA ATGGCACTGG TGGCAAGTCC ATCTATGGGG AGAAATTTGA AGATGAGAAC 000350 000351 TTCATCCTAA AGCATACGGG TCCTGGCATC TTGTCCATGG CAAATGCTGG ACCCAACACA AATGGTTCCC 000420 000421 AGTTTTTCAT CTGCACTGCC AAGACTGAGT GGTTGGATGG CAAGCATGTG GTGTTTGGCA AAGTGAAAGA 000490 000491 AGGCATGAAT ATTGTGGAGG CCATGGAGCG CTTTGGGTCC AGGAATGGCA AGACCAGCAA GAAGATCACC 000560 000561 ATTGCTGACT GTGGACAACT CGAATAAGTT TGACTTGTGT TTTATCTTAA CCACCAGATC ATTCCTTCTG 000630 000631 TAGCTCAGGA GAGCACCCCT CCACCCCATT TGCTCGCAGT ATCCTAGAAT CTTTGTGCTC TCGCTGCAGT 000700 000701 TCCCTTTGGG TTCCATGTTT TCCTTGTTCC CTCCCATGCC TAGCTGGATT GCAGAGTTAA GTTTATGATT 000770 000771 ATGAAATAAA AACTAAATAA CAATTGTCCT CGTTTGAGTT AAGAGTGTTG ATGTAGGCTT TATTTTAAGC 000840 000841 AGTAATGGGT TACTTCTGAA ACATCACTTG TTTGCTTAAT TCTACACAGT ACTTAGATTT TTTTTACTTT 000910 000911 CCAGTCCCAG GAAGTGTCAA TGTTTGTTGA GTGGAATATT GAAAATGTAG GCAGCAACTG GGCATGGTGG 000980 000981 CTCACTGTCT GTAATGTATT ACCTGAGGCA GAAGACCACC TGAGGGTAGG AGTCAAGATC AGCCTGGGCA 001050 001051 ACATAGTGAG ACGCTGTCTC TACAAAAAAT AATTAGCCTG GCCTGGTGGT GCATGCCTAG TCCTAGCTGA 001120 001121 TCTGGAGGCT GACGTGGGAG GATTGCTTGA GCCTAGAGTG AGCTATTATC ATGCCACTGT ACAGCCTGGG 001190 001191 TGTTCACAGA TCTTGTGTCT CAAAGGTAGG CAGAGGCAGG AAAAGCAAGG AGCCAGAATT AAGAGGTTGG 001260 001261 GTCAGTCTGC AGTGAGTTCA TGCATTTAGA GGTGTTCTTC AAGATGACTA ATGTCAAAAA TTGAGACATC 001330 001331 TGTTGCGGTT TTTTTTTTTT TTTTTTCCCC TGGAATGCAG TGGCGTGATC TCAGCTCACT GCAGCCTCCG 001400 001401 CCTCCTGGGT TCAAGTGATT CTAGTGCCTC AGCCTCCTGA GTAGCTGGGA TAATGGGCGT GTGCCACCAT 001470 001471 GCCCAGCTAA TTTTTGTATT TTTAGTATAG ATGGGGTTTC ATCATTTTGA CCAGGCTGGT CTCAAACTCT 001540 001541 TGACCTCAGC TGATGCGCCT GCCTTGGCCT CCCAAACTGC TGAGATTACA GATGTGAGCC ACCGCACCCT 001610 001611 ACCTCATTTT CTGTAACAAA GCTAAGCTTG AACACTGTTG ATGTTCTTGA GGGAAGCATA TTGGGCTTTA 001680 001681 GGCTGTAGGT CAAGTTTATA CATCTTAATT ATGGTGGAAT TCCTATGTAG AGTCTAAAAA GCCAGGTACT 001750 001751 TGGTGCTACA GTCAGTCTCC CTGCAGAGGG TTAAGGCGCA GACTACCTGC AGTGAGGAGG TACTGCTTGT 001820 001821 AGCATATAGA GCCTCTCCCT AGCTTTGGTT ATGGAGGCTT TGAGGTTTTG CAAACCTGAC CAATTTAAGC 001890 001891 CATAAGATCT GGTCAAAGGG ATACCCTTCC CACTAAGGAC TTGGTTTCTC AGGAAATTAT ATGTACAGTG 001960 001961 CTTGCTGGCA GTTAGATGTC AGGACAATCT AAGCTGAGAA AACCCCTTCT CTGCCCACCT TAACAGACCT 002030 002031 CTAGGGTTCT TAACCCAGCA ATCAAGTTTG CCTATCCTAG AGGTGGCGGA TTTGATCATT TGGTGTGTTG 002100 002101 GGCAATTTTT GTTTTACTGT CTGGTTCCTT CTGCGTGAAT TACCACCACC ACCACTTGTG CATCTCAGTC 002170 002171 TTGTGTGTTG TCTGGTTACG TATTCCCTGG GTGATACCAT TCAATGTCTT AATGTACTTG TGGCTCAGAC 002240 002241 CTGAGTGCAA GGTGGAAATA AACATCAAAC ATCTTTTCAT TATCCCTA

Conserved Domains

The Conserved domains of Homo sapiens Cyclophilin is displayed as example.

External Links

• Conserved Protein Domain Family
• WikiPedia
• Pfam