Difference between revisions of "Gene:EIF"
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− | == | + | =='''''Synonymous Genes'''''== |
+ | |||
+ | =='''''Experimental Validated ICGs'''''== | ||
+ | {|class="wikitable sortable" style="font-size:10pt; width:100%" | ||
+ | |- | ||
+ | ! Species | ||
+ | ! Gene Synonymous | ||
+ | ! Application scenarios | ||
+ | ! Publication | ||
+ | ! Year | ||
+ | |- | ||
+ | |align="center"|[[Arachis hypogaea]] | ||
+ | |align="center"|Elongation factor 1B | ||
+ | || | ||
+ | *''Different Tissues'' | ||
+ | || | ||
+ | *[https://www.ncbi.nlm.nih.gov/pubmed/24167633 Evaluation and validation of reference genes for normalization of quantitative real-time PCR based gene expression studies in peanut] | ||
+ | |align="center"|2013 | ||
+ | |- | ||
+ | |align="center"|[[Arachis hypogaea]] | ||
+ | |align="center"|Elongation factor 1b | ||
+ | || | ||
+ | *''Different Developmental Stages & Abiotic Stress'' | ||
+ | || | ||
+ | *[https://www.ncbi.nlm.nih.gov/pubmed/22203160 Validation of reference genes for gene expression studies in peanut by quantitative real-time RT-PCR] | ||
+ | |align="center"|2012 | ||
+ | |- | ||
+ | |align="center"|[[Cajanus cajan]] | ||
+ | |align="center"|Initiation factor 4a | ||
+ | || | ||
+ | *''Drought Stress'' | ||
+ | || | ||
+ | *[https://www.ncbi.nlm.nih.gov/pubmed/25849964 Evaluation and validation of housekeeping genes as reference for gene expression studies in pigeonpea (Cajanus cajan) under drought stress conditions] | ||
+ | |align="center"|2015 | ||
+ | |- | ||
+ | |align="center"|[[Carica papaya]] | ||
+ | |align="center"|Eukaryotic initiation factor 4A | ||
+ | || | ||
+ | *''Different Experimental Conditions'' | ||
+ | || | ||
+ | *[https://www.ncbi.nlm.nih.gov/pubmed/22952972 Evaluation of new reference genes in papaya for accurate transcript normalization under different experimental conditions] | ||
+ | |align="center"|2012 | ||
+ | |- | ||
+ | |align="center"|[[Corynebacterium pseudotuberculosis]] | ||
+ | |align="center"|Elongation factor P | ||
+ | || | ||
+ | *''Abiotic Stress'' | ||
+ | || | ||
+ | *[https://www.ncbi.nlm.nih.gov/pubmed/25017489 Reference genes for RT-qPCR studies in Corynebacterium pseudotuberculosis identified through analysis of RNA-seq data] | ||
+ | |align="center"|2014 | ||
+ | |- | ||
+ | |align="center"|[[Craterostigma plantagineum]] | ||
+ | |align="center"|Eukaryotic initiation factor 5A | ||
+ | || | ||
+ | *''Different Tissues'' | ||
+ | || | ||
+ | *[https://www.ncbi.nlm.nih.gov/pubmed/26025524 Quantification of expression of dehydrin isoforms in the desiccation tolerant plant Craterostigma plantagineum using specifically designed reference genes] | ||
+ | |align="center"|2015 | ||
+ | |- | ||
+ | |align="center"|[[Elaeis guineensis]] | ||
+ | |align="center"|Eukaryotic initiation factor 4A, Eukaryotic initiation factor 4A | ||
+ | || | ||
+ | *''Abiotic Stress'' | ||
+ | || | ||
+ | *[https://www.ncbi.nlm.nih.gov/pubmed/24862192 Analysis of multiple transcriptomes of the African oil palm (Elaeis guineensis) to identify reference genes for RT-qPCR] | ||
+ | |align="center"|2014 | ||
+ | |- | ||
+ | |align="center"|[[Glycine max]] | ||
+ | |align="center"|Eukaryotic elongation factor 1 beta | ||
+ | || | ||
+ | *''Different Tissues & Abiotic Stress'' | ||
+ | || | ||
+ | *[https://www.ncbi.nlm.nih.gov/pubmed/23029532 Evaluation of candidate reference genes for normalization of quantitative RT-PCR in soybean tissues under various abiotic stress conditions] | ||
+ | |align="center"|2012 | ||
+ | |- | ||
+ | |align="center"|[[Glycine max]] | ||
+ | |align="center"|Elongation factor 1-beta | ||
+ | || | ||
+ | *''Hypoxic Condition'' | ||
+ | || | ||
+ | *[https://www.ncbi.nlm.nih.gov/pubmed/24615050 Reference genes for quantitative real-time polymerase chain reaction studies in soybean plants under hypoxic conditions] | ||
+ | |align="center"|2014 | ||
+ | |- | ||
+ | |align="center"|[[Litsea cubeba]] | ||
+ | |align="center"|Eukaryotic initiation factor 4-alpha | ||
+ | || | ||
+ | *''Different Developmental Stages & Tissues'' | ||
+ | || | ||
+ | *[https://www.ncbi.nlm.nih.gov/pubmed/24162560 Identification of appropriate reference genes for normalizing transcript expression by quantitative real-time PCR in Litsea cubeba] | ||
+ | |align="center"|2013 | ||
+ | |- | ||
+ | |align="center"|[[Oryza sativa]] | ||
+ | |align="center"|Eukaryotic initiation factor 4A-3 | ||
+ | || | ||
+ | *''Anther Development'' | ||
+ | || | ||
+ | *[https://www.ncbi.nlm.nih.gov/pubmed/24492537 Defining reference genes for quantitative real-time PCR analysis of anther development in rice] | ||
+ | |align="center"|2014 | ||
+ | |- | ||
+ | |align="center"|[[Oryza sativa]] | ||
+ | |align="center"|Eukaryotic initiation factor 4A-3 | ||
+ | || | ||
+ | *''Seed Development'' | ||
+ | || | ||
+ | *[https://link.springer.com/article/10.1007/s11105-009-0124-1 Validation of candidate reference genes for the accurate normalization of real-time quantitative RT-PCR data in rice during seed development] | ||
+ | |align="center"|2010 | ||
+ | |- | ||
+ | |align="center"|[[Panax ginseng]] | ||
+ | |align="center"|Eukaryotic translation initiation factor 3G1 | ||
+ | || | ||
+ | *''Different Tissues & Abiotic Stress'' | ||
+ | || | ||
+ | *[https://www.ncbi.nlm.nih.gov/pubmed/26793228 Validation of Suitable Reference Genes for Quantitative Gene Expression Analysis in Panax ginseng] | ||
+ | |align="center"|2015 | ||
+ | |- | ||
+ | |align="center"|[[Panicum virgatum]] | ||
+ | |align="center"|Eukaryotic initiation factor 4a | ||
+ | || | ||
+ | *''Different Tissues & Abiotic Stress'' | ||
+ | || | ||
+ | *[https://www.ncbi.nlm.nih.gov/pubmed/24621568 Selection and validation of reference genes for gene expression analysis in switchgrass (Panicum virgatum) using quantitative real-time RT-PCR] | ||
+ | |align="center"|2014 | ||
+ | |- | ||
+ | |align="center"|[[Panonychus citri]] | ||
+ | |align="center"|Elongation factor-1 alpha | ||
+ | || | ||
+ | *''Different Developmental Stages & Abiotic Stress'' | ||
+ | || | ||
+ | *[https://www.ncbi.nlm.nih.gov/pubmed/22203483 Evaluation of suitable reference genes for quantitative RT-PCR during development and abiotic stress in Panonychus citri (McGregor)(Acari: Tetranychidae)] | ||
+ | |align="center"|2012 | ||
+ | |- | ||
+ | |align="center"|[[Pennisetum glaucum]] | ||
+ | |align="center"|Eukaryotic initiation factor 4A | ||
+ | || | ||
+ | *''Different Tissues & Genotypes'' | ||
+ | || | ||
+ | *[http://www.sciencedirect.com/science/article/pii/S2352407315000062 Cloning and validation of reference genes for normalization of gene expression studies in pearl millet [Pennisetum glaucum (L.) R. Br.] by quantitative real-time PCR] | ||
+ | |align="center"|2015 | ||
+ | |- | ||
+ | |align="center"|[[Pyropia yezoensis]] | ||
+ | |align="center"|Translation initiation factor 4A | ||
+ | || | ||
+ | *''Different Developmental Stages & Abiotic Stress'' | ||
+ | || | ||
+ | *[https://link.springer.com/article/10.1007/s10811-014-0359-6 Selection of reference genes for gene expression normalization in Pyropia yezoensis using quantitative real-time PCR] | ||
+ | |align="center"|2014 | ||
+ | |- | ||
+ | |align="center"|[[Raphanus sativus]] | ||
+ | |align="center"|Translation elongation factor 2 | ||
+ | || | ||
+ | *''Different Tissues & Cultivars & Developmental Stages'' | ||
+ | || | ||
+ | *[https://www.ncbi.nlm.nih.gov/pubmed/22771808 Evaluation of reference genes for gene expression studies in radish (Raphanus sativus L.) using quantitative real-time PCR] | ||
+ | |align="center"|2012 | ||
+ | |- | ||
+ | |align="center"|[[Saccharomyces cerevisiae]] | ||
+ | |align="center"|TATA-box binding protein associated factor 10 | ||
+ | || | ||
+ | *''Various Physiological States'' | ||
+ | || | ||
+ | *[https://www.ncbi.nlm.nih.gov/pubmed/19874630 Validation of reference genes for quantitative expression analysis by real-time RT-PCR in Saccharomyces cerevisiae] | ||
+ | |align="center"|2009 | ||
+ | |- | ||
+ | |align="center"|[[Sesamia inferens]] | ||
+ | |align="center"|Elongation factor 1 | ||
+ | || | ||
+ | *''Different Tissues & Developmental Stages'' | ||
+ | || | ||
+ | *[https://www.ncbi.nlm.nih.gov/pubmed/25585250 Exploring valid reference genes for quantitative real-time PCR analysis in Sesamia inferens (Lepidoptera: Noctuidae)] | ||
+ | |align="center"|2015 | ||
+ | |- | ||
+ | |align="center"|[[Sorghum bicolor]] | ||
+ | |align="center"|Eukaryotic Initiation Factor 4A | ||
+ | || | ||
+ | *''Different Tissues & Abiotic Stress'' | ||
+ | || | ||
+ | *[https://www.ncbi.nlm.nih.gov/pubmed/27200008 Evaluation of Sorghum Sorghum bicolor (L.) Reference Genes in Various Tissues and under Abiotic Stress Conditions for Quantitative Real-Time PCR Data Normalization] | ||
+ | |align="center"|2016 | ||
+ | |||
+ | |} | ||
+ | |||
+ | =='''''External Links'''''== | ||
+ | * [https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam01342 NCBI COnserved Protein Domain Family] | ||
+ | * [https://en.wikipedia.org/wiki/SAND_DNA-binding_protein_domain WikiPedia] | ||
+ | * [http://pfam.xfam.org/family/SAND Pfam] |
Revision as of 11:26, 31 July 2017
Synonymous Genes
Experimental Validated ICGs
Species | Gene Synonymous | Application scenarios | Publication | Year |
---|---|---|---|---|
Arachis hypogaea | Elongation factor 1B |
|
2013 | |
Arachis hypogaea | Elongation factor 1b |
|
2012 | |
Cajanus cajan | Initiation factor 4a |
|
2015 | |
Carica papaya | Eukaryotic initiation factor 4A |
|
2012 | |
Corynebacterium pseudotuberculosis | Elongation factor P |
|
2014 | |
Craterostigma plantagineum | Eukaryotic initiation factor 5A |
|
2015 | |
Elaeis guineensis | Eukaryotic initiation factor 4A, Eukaryotic initiation factor 4A |
|
2014 | |
Glycine max | Eukaryotic elongation factor 1 beta |
|
2012 | |
Glycine max | Elongation factor 1-beta |
|
2014 | |
Litsea cubeba | Eukaryotic initiation factor 4-alpha |
|
2013 | |
Oryza sativa | Eukaryotic initiation factor 4A-3 |
|
2014 | |
Oryza sativa | Eukaryotic initiation factor 4A-3 |
|
2010 | |
Panax ginseng | Eukaryotic translation initiation factor 3G1 |
|
2015 | |
Panicum virgatum | Eukaryotic initiation factor 4a |
|
2014 | |
Panonychus citri | Elongation factor-1 alpha |
|
2012 | |
Pennisetum glaucum | Eukaryotic initiation factor 4A |
|
2015 | |
Pyropia yezoensis | Translation initiation factor 4A |
|
2014 | |
Raphanus sativus | Translation elongation factor 2 |
|
2012 | |
Saccharomyces cerevisiae | TATA-box binding protein associated factor 10 |
|
2009 | |
Sesamia inferens | Elongation factor 1 |
|
2015 | |
Sorghum bicolor | Eukaryotic Initiation Factor 4A |
|
2016 |