Difference between revisions of "Gene:EIF"

From ICG
Jump to navigation Jump to search
(Created page with "==Family Symbol==")
 
Line 1: Line 1:
==Family Symbol==
+
=='''''Synonymous Genes'''''==
 +
 
 +
=='''''Experimental Validated ICGs'''''==
 +
{|class="wikitable sortable" style="font-size:10pt; width:100%"
 +
|-
 +
! Species 
 +
! Gene Synonymous 
 +
! Application scenarios
 +
! Publication
 +
! Year
 +
|-
 +
|align="center"|[[Arachis hypogaea]]
 +
|align="center"|Elongation factor 1B
 +
||
 +
*''Different Tissues''
 +
||
 +
*[https://www.ncbi.nlm.nih.gov/pubmed/24167633 Evaluation and validation of reference genes for normalization of quantitative real-time PCR based gene expression studies in peanut]
 +
|align="center"|2013
 +
|-
 +
|align="center"|[[Arachis hypogaea]]
 +
|align="center"|Elongation factor 1b
 +
||
 +
*''Different Developmental Stages & Abiotic Stress''
 +
||
 +
*[https://www.ncbi.nlm.nih.gov/pubmed/22203160 Validation of reference genes for gene expression studies in peanut by quantitative real-time RT-PCR]
 +
|align="center"|2012
 +
|-
 +
|align="center"|[[Cajanus cajan]]
 +
|align="center"|Initiation factor 4a
 +
||
 +
*''Drought Stress''
 +
||
 +
*[https://www.ncbi.nlm.nih.gov/pubmed/25849964 Evaluation and validation of housekeeping genes as reference for gene expression studies in pigeonpea (Cajanus cajan) under drought stress conditions]
 +
|align="center"|2015
 +
|-
 +
|align="center"|[[Carica papaya]]
 +
|align="center"|Eukaryotic initiation factor 4A
 +
||
 +
*''Different Experimental Conditions''
 +
||
 +
*[https://www.ncbi.nlm.nih.gov/pubmed/22952972 Evaluation of new reference genes in papaya for accurate transcript normalization under different experimental conditions]
 +
|align="center"|2012
 +
|-
 +
|align="center"|[[Corynebacterium pseudotuberculosis]]
 +
|align="center"|Elongation factor P
 +
||
 +
*''Abiotic Stress''
 +
||
 +
*[https://www.ncbi.nlm.nih.gov/pubmed/25017489 Reference genes for RT-qPCR studies in Corynebacterium pseudotuberculosis identified through analysis of RNA-seq data]
 +
|align="center"|2014
 +
|-
 +
|align="center"|[[Craterostigma plantagineum]]
 +
|align="center"|Eukaryotic initiation factor 5A
 +
||
 +
*''Different Tissues''
 +
||
 +
*[https://www.ncbi.nlm.nih.gov/pubmed/26025524 Quantification of expression of dehydrin isoforms in the desiccation tolerant plant Craterostigma plantagineum using specifically designed reference genes]
 +
|align="center"|2015
 +
|-
 +
|align="center"|[[Elaeis guineensis]]
 +
|align="center"|Eukaryotic initiation factor 4A, Eukaryotic initiation factor 4A
 +
||
 +
*''Abiotic Stress''
 +
||
 +
*[https://www.ncbi.nlm.nih.gov/pubmed/24862192 Analysis of multiple transcriptomes of the African oil palm (Elaeis guineensis) to identify reference genes for RT-qPCR]
 +
|align="center"|2014
 +
|-
 +
|align="center"|[[Glycine max]]
 +
|align="center"|Eukaryotic elongation factor 1 beta
 +
||
 +
*''Different Tissues & Abiotic Stress''
 +
||
 +
*[https://www.ncbi.nlm.nih.gov/pubmed/23029532 Evaluation of candidate reference genes for normalization of quantitative RT-PCR in soybean tissues under various abiotic stress conditions]
 +
|align="center"|2012
 +
|-
 +
|align="center"|[[Glycine max]]
 +
|align="center"|Elongation factor 1-beta
 +
||
 +
*''Hypoxic Condition''
 +
||
 +
*[https://www.ncbi.nlm.nih.gov/pubmed/24615050 Reference genes for quantitative real-time polymerase chain reaction studies in soybean plants under hypoxic conditions]
 +
|align="center"|2014
 +
|-
 +
|align="center"|[[Litsea cubeba]]
 +
|align="center"|Eukaryotic initiation factor 4-alpha
 +
||
 +
*''Different Developmental Stages & Tissues''
 +
||
 +
*[https://www.ncbi.nlm.nih.gov/pubmed/24162560 Identification of appropriate reference genes for normalizing transcript expression by quantitative real-time PCR in Litsea cubeba]
 +
|align="center"|2013
 +
|-
 +
|align="center"|[[Oryza sativa]]
 +
|align="center"|Eukaryotic initiation factor 4A-3
 +
||
 +
*''Anther Development''
 +
||
 +
*[https://www.ncbi.nlm.nih.gov/pubmed/24492537 Defining reference genes for quantitative real-time PCR analysis of anther development in rice]
 +
|align="center"|2014
 +
|-
 +
|align="center"|[[Oryza sativa]]
 +
|align="center"|Eukaryotic initiation factor 4A-3
 +
||
 +
*''Seed Development''
 +
||
 +
*[https://link.springer.com/article/10.1007/s11105-009-0124-1 Validation of candidate reference genes for the accurate normalization of real-time quantitative RT-PCR data in rice during seed development]
 +
|align="center"|2010
 +
|-
 +
|align="center"|[[Panax ginseng]]
 +
|align="center"|Eukaryotic translation initiation factor 3G1
 +
||
 +
*''Different Tissues & Abiotic Stress''
 +
||
 +
*[https://www.ncbi.nlm.nih.gov/pubmed/26793228 Validation of Suitable Reference Genes for Quantitative Gene Expression Analysis in Panax ginseng]
 +
|align="center"|2015
 +
|-
 +
|align="center"|[[Panicum virgatum]]
 +
|align="center"|Eukaryotic initiation factor 4a
 +
||
 +
*''Different Tissues & Abiotic Stress''
 +
||
 +
*[https://www.ncbi.nlm.nih.gov/pubmed/24621568 Selection and validation of reference genes for gene expression analysis in switchgrass (Panicum virgatum) using quantitative real-time RT-PCR]
 +
|align="center"|2014
 +
|-
 +
|align="center"|[[Panonychus citri]]
 +
|align="center"|Elongation factor-1 alpha
 +
||
 +
*''Different Developmental Stages & Abiotic Stress''
 +
||
 +
*[https://www.ncbi.nlm.nih.gov/pubmed/22203483 Evaluation of suitable reference genes for quantitative RT-PCR during development and abiotic stress in Panonychus citri (McGregor)(Acari: Tetranychidae)]
 +
|align="center"|2012
 +
|-
 +
|align="center"|[[Pennisetum glaucum]]
 +
|align="center"|Eukaryotic initiation factor 4A
 +
||
 +
*''Different Tissues & Genotypes''
 +
||
 +
*[http://www.sciencedirect.com/science/article/pii/S2352407315000062 Cloning and validation of reference genes for normalization of gene expression studies in pearl millet [Pennisetum glaucum (L.) R. Br.] by quantitative real-time PCR]
 +
|align="center"|2015
 +
|-
 +
|align="center"|[[Pyropia yezoensis]]
 +
|align="center"|Translation initiation factor 4A
 +
||
 +
*''Different Developmental Stages & Abiotic Stress''
 +
||
 +
*[https://link.springer.com/article/10.1007/s10811-014-0359-6 Selection of reference genes for gene expression normalization in Pyropia yezoensis using quantitative real-time PCR]
 +
|align="center"|2014
 +
|-
 +
|align="center"|[[Raphanus sativus]]
 +
|align="center"|Translation elongation factor 2
 +
||
 +
*''Different Tissues & Cultivars & Developmental Stages''
 +
||
 +
*[https://www.ncbi.nlm.nih.gov/pubmed/22771808 Evaluation of reference genes for gene expression studies in radish (Raphanus sativus L.) using quantitative real-time PCR]
 +
|align="center"|2012
 +
|-
 +
|align="center"|[[Saccharomyces cerevisiae]]
 +
|align="center"|TATA-box binding protein associated factor 10 
 +
||
 +
*''Various Physiological States''
 +
||
 +
*[https://www.ncbi.nlm.nih.gov/pubmed/19874630 Validation of reference genes for quantitative expression analysis by real-time RT-PCR in Saccharomyces cerevisiae]
 +
|align="center"|2009
 +
|-
 +
|align="center"|[[Sesamia inferens]]
 +
|align="center"|Elongation factor 1
 +
||
 +
*''Different Tissues & Developmental Stages''
 +
||
 +
*[https://www.ncbi.nlm.nih.gov/pubmed/25585250 Exploring valid reference genes for quantitative real-time PCR analysis in Sesamia inferens (Lepidoptera: Noctuidae)]
 +
|align="center"|2015
 +
|-
 +
|align="center"|[[Sorghum bicolor]]
 +
|align="center"|Eukaryotic Initiation Factor 4A
 +
||
 +
*''Different Tissues & Abiotic Stress''
 +
||
 +
*[https://www.ncbi.nlm.nih.gov/pubmed/27200008 Evaluation of Sorghum Sorghum bicolor (L.) Reference Genes in Various Tissues and under Abiotic Stress Conditions for Quantitative Real-Time PCR Data Normalization]
 +
|align="center"|2016
 +
 
 +
|}
 +
 
 +
=='''''External Links'''''==
 +
* [https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam01342 NCBI COnserved Protein Domain Family]
 +
* [https://en.wikipedia.org/wiki/SAND_DNA-binding_protein_domain WikiPedia]
 +
* [http://pfam.xfam.org/family/SAND Pfam]

Revision as of 11:26, 31 July 2017

Synonymous Genes

Experimental Validated ICGs

Species Gene Synonymous Application scenarios Publication Year
Arachis hypogaea Elongation factor 1B
  • Different Tissues
2013
Arachis hypogaea Elongation factor 1b
  • Different Developmental Stages & Abiotic Stress
2012
Cajanus cajan Initiation factor 4a
  • Drought Stress
2015
Carica papaya Eukaryotic initiation factor 4A
  • Different Experimental Conditions
2012
Corynebacterium pseudotuberculosis Elongation factor P
  • Abiotic Stress
2014
Craterostigma plantagineum Eukaryotic initiation factor 5A
  • Different Tissues
2015
Elaeis guineensis Eukaryotic initiation factor 4A, Eukaryotic initiation factor 4A
  • Abiotic Stress
2014
Glycine max Eukaryotic elongation factor 1 beta
  • Different Tissues & Abiotic Stress
2012
Glycine max Elongation factor 1-beta
  • Hypoxic Condition
2014
Litsea cubeba Eukaryotic initiation factor 4-alpha
  • Different Developmental Stages & Tissues
2013
Oryza sativa Eukaryotic initiation factor 4A-3
  • Anther Development
2014
Oryza sativa Eukaryotic initiation factor 4A-3
  • Seed Development
2010
Panax ginseng Eukaryotic translation initiation factor 3G1
  • Different Tissues & Abiotic Stress
2015
Panicum virgatum Eukaryotic initiation factor 4a
  • Different Tissues & Abiotic Stress
2014
Panonychus citri Elongation factor-1 alpha
  • Different Developmental Stages & Abiotic Stress
2012
Pennisetum glaucum Eukaryotic initiation factor 4A
  • Different Tissues & Genotypes
2015
Pyropia yezoensis Translation initiation factor 4A
  • Different Developmental Stages & Abiotic Stress
2014
Raphanus sativus Translation elongation factor 2
  • Different Tissues & Cultivars & Developmental Stages
2012
Saccharomyces cerevisiae TATA-box binding protein associated factor 10
  • Various Physiological States
2009
Sesamia inferens Elongation factor 1
  • Different Tissues & Developmental Stages
2015
Sorghum bicolor Eukaryotic Initiation Factor 4A
  • Different Tissues & Abiotic Stress
2016

External Links