Difference between revisions of "Gene:GAPDH"

From ICG
Jump to navigation Jump to search
 
(8 intermediate revisions by 2 users not shown)
Line 1: Line 1:
 
=='''''Synonymous Genes'''''==
 
=='''''Synonymous Genes'''''==
 +
* GAPDH <=> GAPDH
  
=='''''Experimental Validated ICGs'''''==
+
=='''''Applicable Species'''''==
 
{|class="wikitable sortable" style="font-size:10pt; width:100%"
 
{|class="wikitable sortable" style="font-size:10pt; width:100%"
 
|-
 
|-
Line 585: Line 586:
 
*[http://www.sciencedirect.com/science/article/pii/S1871141310002325 Selection of stable reference genes for quantitative real-time PCR in porcine gastrointestinal tissues]
 
*[http://www.sciencedirect.com/science/article/pii/S1871141310002325 Selection of stable reference genes for quantitative real-time PCR in porcine gastrointestinal tissues]
 
|align="center"|2010
 
|align="center"|2010
|-
 
|align="center"|[[Valsa mali var. mali]]
 
|align="center"|6-phosphogluconate dehydrogenase decarboxylating
 
||
 
*''Different Strains & Abiotic Stress Treatments''
 
||
 
*[https://www.ncbi.nlm.nih.gov/pubmed/23508400 Validation of reference genes for gene expression analysis in Valsa mali var. mali using real-time quantitative PCR]
 
|align="center"|2013
 
 
|-
 
|-
 
|align="center"|[[Vernicia fordii]]
 
|align="center"|[[Vernicia fordii]]
Line 642: Line 635:
 
{{Str|
 
{{Str|
 
SOURCE = '''''Homo sapiens''''' GAPDH|
 
SOURCE = '''''Homo sapiens''''' GAPDH|
Str= [[File:GAPDH.png|center|770px|]]|
+
Str= [[File:GAPDH.png|center|770px|link=http://icg.big.ac.cn/index.php/Gene:GAPDH]]|
 
 
 
 
 
}}
 
}}
  
 
=='''''External Links'''''==
 
=='''''External Links'''''==
* [https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam01342 NCBI COnserved Protein Domain Family]
+
* [https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?ascbin=8&maxaln=10&seltype=2&uid=PLN02272 NCBI Conserved Protein Domain Family]
* [https://en.wikipedia.org/wiki/SAND_DNA-binding_protein_domain WikiPedia]
+
* [https://en.wikipedia.org/wiki/Glyceraldehyde_3-phosphate_dehydrogenase WikiPedia]
* [http://pfam.xfam.org/family/SAND Pfam]
+
* [http://www.ebi.ac.uk/interpro/entry/IPR020830?q=GAPDH InterPro]
 +
* [http://pfam.xfam.org/family/PF02800 Pfam (Gp_dh_C)]
 +
* [http://pfam.xfam.org/family/PF00044 Pfam (Gp_dh_N)]

Latest revision as of 02:16, 30 August 2017

Synonymous Genes

  • GAPDH <=> GAPDH

Applicable Species

Species Gene Synonymous Application scenarios Publication Year
Agrostis stolonifera Glyceraldehyde 3-phosphate dehydrogenase
  • Abiotic Stresses
2015
Aphis gossypii Glyceraldehyde-3-phosphate dehydrogenase
  • Different Developmental Stages & Geographical Populations
2016
Apis mellifera GAPDH
  • Bacterial Challenge
2008
Bemisia tabaci Glyceraldehyde-3-phosphate dehydrogenase
  • Different Commercially Available Insecticides
2014
Bos indicus Glyceraldehyde-3-phosphate dehydrogenase
  • Milk Somatic Cells
2012
Brassica rapa subsp. pekinensis Glyceraldehyde-3-phosphate dehydrogenase
  • Biotic Stress & Mycotic Infection
2010
Canis lupus familiaris Glyceraldehyde-3-phospate dehydrogenase
  • Different Developmental Stages & Tissues
2013
Capsicum annuum Glyceraldehyde-3-phosphate dehydrogenase
  • Different Tissues & Abiotic Stress & Hormonal Treatment
2011
Caragana korshinskii Glyceraldehyde 3-phosphate dehydrogenase
  • Abiotic Stress
2014
Casuarina glauca Glyceraldehyde 3-phosphate dehydrogenase
  • Different Tissues & Abiotic Stress
2015
Channa striatus Glyceraldehyde-3-phosphate dehydrogenase
  • High-temperature Stress
2016
Cicer arietinum Glyceraldehyde-3-phosphate dehydrogenase
  • Different Developmental Stages & Abiotic Stress
2010
Coffea arabica L. Glyceraldehyde-3-phosphate-dehydrogenase
  • Abiotic Stress
2013
Coffea arabica L. Glyceraldehyde 3-phosphate dehydrogenase
  • Different Genotypes & Abiotic Stress
2012
Craterostigma plantagineum Glyceraldehyde-3 phosphate dehydrogenase
  • Different Tissues
2015
Cynodon dactylon Glyceraldehyde 3-phosphate dehydrogenase
  • Abiotic Stress
2014
Daucus carota Glyceraldehyde 3-phosphate dehydrogenase
  • Different Tissues
2015
Dendrocalamus latiflorus Glyceraldehyde 3-phosphate dehydrogenase
  • Different Tissues & Ploidy
2014
Equus caballus Glyceraldehyde-3-phosphate dehydrogenase
  • Bronchoalveolar Lavage Cells
2011
Eremosparton songoricum Glyceraldehyde-3-phosphate dehydrogenase
  • Different Tissues & Abiotic Stress
2012
Festuca arundinacea Glyceraldehyde 3-phosphate dehydrogenase
  • Abiotic Stresses
2015
Fragaria ananassa Glyceraldehyde-3-phosphate dehydrogenase
  • Different Developmental Stages & Tissues
2015
Gallus gallus Glyceraldehyde-3-phosphate dehydrogenase
  • Lymphoid Organs
2016
Gossypium hirsutum Glyceraldehyde-3-phosphate dehydroge- nase C subunit
  • Abiotic Stress
2013
Homo sapiens Glyceraldehyde-3-phosphate dehydrogenase
  • Glyceraldehyde-3-phosphate dehydrogenase
2012
Homo sapiens Glyceraldehyde-3-phosphate dehydrogenase
  • Glioma
2015
Homo sapiens Glyceraldehyde-3-phosphate dehydrogenase
  • Prostate Cancer Cells
2013
Homo sapiens Glyceraldehyde-3-phosphate dehydrogenase
  • Stomach Cancer
2010
Homo sapiens Glyceraldehyde-3-phosphate dehydrogenase
  • Endometrioid Endometrial Carcinoma Tissues
2014
Homo sapiens Glycerladehyde 3-phosphate dehydrogenase
  • Epicardial Adipose Tissue
2012
Homo sapiens Glyceraldehyde-3-phosphate dehydrogenase
  • Head and Neck Squamous Cell Carcinoma
2009
Homo sapiens Glyceraldehyde-3-phosphate dehydrogenase
  • Hepatocellular Carcinoma
2008
Hordeum vulgare Glyceraldehyde-3-phosphate dehydrogenase
  • Different Developmental stages
2012
Ipomoea batatas Glyceraldehyde-3-phosphate dehydrogenase
  • Abiotic Stress
2012
Jatropha curcas Glyceraldehyde 3-phosphate dehydrogenase
  • Staminate & Pistillate Flowers
2017
Lilium davidii Glyceraldehyde-3- phosphate dehydrogenase
  • Different Experimental Conditions
2015
Lilium regale Glyceraldehyde-3-phosphate dehydrogenase
  • Different Developmental Stages & Abiotic Stress
2016
Lolium spp Glyceraldehyde-3-phosphate-dehydrogenase
  • Resistant to Acetolactate-Synthase Inhibitors
2013
Lycium barbarum Glyceraldehyde-3-phosphate dehydrogenase-like
  • Fruit Development
2013
Mus musculus Glyceraldehyde-3-phosphate dehydrogenase
  • Mammary Glands
2010
Mus musculus Glyceraldehydes-3-phosphate dehydrogenase
  • Uterus in the Peri-Implantation Period
2013
Mus musculus Glyceraldehyde-3-phosphate dehydrogenase
  • Different Tissues & Ageing
2016
Mus musculus Glyceraldehyde-3-phosphate dehydrogenase
  • Testis Development
2014
Mus musculus Glyceraldehyde-3-phosphate dehydrogenase
  • Intestinal Epithelial Cells
2013
Musca domestica Glyceraldehyde-3-phosphate dehydrogenase-like
  • Abiotic & Biotic Stress
2013
Oenococcus oeni D -glyceraldehyde-3-phosphate dehydrogenase
  • Whole Cell Under Various Culture Conditions
2012
Oreochromis niloticus Glyceraldehyde-3-phosphate dehydrogenase
  • Different Tissues & Bacterial Infection
2013
Oryza sativa Glyceraldehyde-3-phosphate dehydrogenase
  • Anther Development
2014
Ovis aries Glyceraldehyde-3-phosphate dehydrogenase
  • Preterm Lamb Model
2016
Paeonia suffruticosa Glyceraldehyde 3-phosphate dehydrogenase
  • Flower Development & Different Cultivars
2016
Panonychus citri Glyceraldhyde-3-phosphate dehydrogenase
  • Different Developmental Stages & Abiotic Stress
2012
Pecten maximus Glyceraldehyde-3-phosphate dehydrogenase
  • Different Tissues
2012
Plutella xylostella Glyceraldehyde-3-phosphate dehy- drogenase
  • Different Developmental Stages & Tissues & Abiotic Stress
2013
Poa pratensis Glyceraldehyde 3-phosphate Dehydrogenase
  • Different Tissues & Abiotic Stress
2015
Rattus norvegicus Glyceraldehyde-3-phosphate dehydrogenase
  • Asphyxial Cardiac Arrest Model
2008
Rattus norvegicus Glyceraldehyde-3-phosphate dehydrogenase
  • Cardiosphere-derived Cells
2012
Rattus norvegicus Glyceraldehyde-3-phosphate dehydrogenase
  • Adipose Tissue
2016
Rattus norvegicus Glyceraldehyde-3-phosphate dehydrogenase
  • Intestinal Epithelial Cells
2013
Rhodnius prolixus Glyceralde hyde-3- phosphate dehydrogen ase
  • Different Experimental Conditions
2012
Ruditapes philippinarum Glyceraldehyde-3-phosphate dehydrogenase
  • Copper Treated
2017
Saccharum hybrid cultivar Glyceraldehyde 3-phosphate dehydrogenase
  • Drought Stress
2014
Salicornia europaea Glyceraldehyde 3-phosphate dehydrogenase
  • Abiotic Stress
2014
Scophthalmus maximus Glyceraldehyde-3-phosphate dehydrogenase
  • Viral Infection
2013
Sesamia inferens glyceraldehyde-3 phosphate dehydrogenase
  • Different Tissues & Developmental Stages
2015
Spodoptera exigua Glyceralde hyde-3-phosphate dehydrogen ase
  • Different Developmental Stages & Tissues
2014
Spodoptera litura Glyceraldehyde 3-phosphate dehydrogenase
  • Abiotic & Biotic treatments
2013
Stenella coeruleoalba Glyceraldehyde-3-phosphate dehydrogenase
  • Striped Dolphin Skin
2006
Stipa grandis Glyceraldehyde-3-phosphate dehydrogenase
  • Abiotic Stress
2017
Sus scrofa Glyceraldehyde 3-phosphate dehydrogenase
  • Spermatozoa Cryopreservation
2014
Sus scrofa Glyceraldehyde-3-phosphate dehydrogenase
  • Actinobacillus pleuropneumoniae Infection
2007
Sus scrofa Glyceraldehyde 3-phosphate dehydrogenase
  • Oocytes & Preimplantation Embryos
2007
Sus scrofa Glyceraldehyde 3-phosphate dehydrogenase
  • Gastrointestinal Tissues
2010
Vernicia fordii Glyceraldehyde-3-phosphate dehydrogenase
  • Seed Development
2012
Vitis vinifera Glyceraldehyde-3-phosphate dehy-drogenase
  • Mycotic Infection
2013

Featured Sequence

The Sequence of Homo sapiens GAPDH is displayed as example.

000001 GCCTCAAGAC CTTGGGCTGG GACTGGCTGA GCCTGGCGGG AGGCGGGGTC CGAGTCACCG CCTGCCGCCG 000070
000071 CGCCCCCGGT TTCTATAAAT TGAGCCCGCA GCCTCCCGCT TCGCTCTCTG CTCCTCCTGT TCGACAGTCA 000140
000141 GCCGCATCTT CTTTTGCGTC GCCAGCCGAG CCACATCGCT CAGACACCAT GGGGAAGGTG AAGGTCGGAG 000210
000211 TCAACGGATT TGGTCGTATT GGGCGCCTGG TCACCAGGGC TGCTTTTAAC TCTGGTAAAG TGGATATTGT 000280
000281 TGCCATCAAT GACCCCTTCA TTGACCTCAA CTACATGGTT TACATGTTCC AATATGATTC CACCCATGGC 000350
000351 AAATTCCATG GCACCGTCAA GGCTGAGAAC GGGAAGCTTG TCATCAATGG AAATCCCATC ACCATCTTCC 000420
000421 AGGAGCGAGA TCCCTCCAAA ATCAAGTGGG GCGATGCTGG CGCTGAGTAC GTCGTGGAGT CCACTGGCGT 000490
000491 CTTCACCACC ATGGAGAAGG CTGGGGCTCA TTTGCAGGGG GGAGCCAAAA GGGTCATCAT CTCTGCCCCC 000560
000561 TCTGCTGATG CCCCCATGTT CGTCATGGGT GTGAACCATG AGAAGTATGA CAACAGCCTC AAGATCATCA 000630
000631 GCAATGCCTC CTGCACCACC AACTGCTTAG CACCCCTGGC CAAGGTCATC CATGACAACT TTGGTATCGT 000700
000701 GGAAGGACTC ATGACCACAG TCCATGCCAT CACTGCCACC CAGAAGACTG TGGATGGCCC CTCCGGGAAA 000770
000771 CTGTGGCGTG ATGGCCGCGG GGCTCTCCAG AACATCATCC CTGCCTCTAC TGGCGCTGCC AAGGCTGTGG 000840
000841 GCAAGGTCAT CCCTGAGCTG AACGGGAAGC TCACTGGCAT GGCCTTCCGT GTCCCCACTG CCAACGTGTC 000910
000911 AGTGGTGGAC CTGACCTGCC GTCTAGAAAA ACCTGCCAAA TATGATGACA TCAAGAAGGT GGTGAAGCAG 000980
000981 GCGTCGGAGG GCCCCCTCAA GGGCATCCTG GGCTACACTG AGCACCAGGT GGTCTCCTCT GACTTCAACA 001050
001051 GCGACACCCA CTCCTCCACC TTTGACGCTG GGGCTGGCAT TGCCCTCAAC GACCACTTTG TCAAGCTCAT 001120
001121 TTCCTGGTAT GACAACGAAT TTGGCTACAG CAACAGGGTG GTGGACCTCA TGGCCCACAT GGCCTCCAAG 001190
001191 GAGTAAGACC CCTGGACCAC CAGCCCCAGC AAGAGCACAA GAGGAAGAGA GAGACCCTCA CTGCTGGGGA 001260
001261 GTCCCTGCCA CACTCAGTCC CCCACCACAC TGAATCTCCC CTCCTCACAG TTGCCATGTA GACCCCTTGA 001330
001331 AGAGGGGAGG GGCCTAGGGA GCCGCACCTT GTCATGTACC ATCAATAAAG TACCCTGTGC TCAACCAGTT 001400
001401 AAAAAAAAAA AAAAAAAAAA A

Conserved Domains

The Conserved domains of Homo sapiens GAPDH is displayed as example.

GAPDH.png

External Links