Difference between revisions of "Gene:Ubiquitin"

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=='''''Synonymous Genes'''''==
 
=='''''Synonymous Genes'''''==
* Ubiquitin <=> UBQ10
+
* Ubiquitin <=> UBQ10, Ubiquitin, Ubiquitin C,UBQ2
  
=='''''Experimental Validated ICGs'''''==
+
=='''''Applicable Species'''''==
 
{|class="wikitable sortable" style="font-size:10pt; width:100%"
 
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{{Str|
 
{{Str|
 
SOURCE = '''''Homo sapiens''''' Ubiquitin|
 
SOURCE = '''''Homo sapiens''''' Ubiquitin|
Str= [[File:Ubiquitin.png|center|770px|]]|
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Str= [[File:Ubiquitin.png|center|770px|link=http://icg.big.ac.cn/index.php/Gene:Ubiquitin]]|
  
  
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=='''''External Links'''''==
 
=='''''External Links'''''==
* [https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam01342 NCBI COnserved Protein Domain Family]
+
* [https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?ascbin=8&maxaln=10&seltype=2&uid=cd01803 NCBI Conserved Protein Domain Family]
* [https://en.wikipedia.org/wiki/SAND_DNA-binding_protein_domain WikiPedia]
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* [https://en.wikipedia.org/wiki/Ubiquitin WikiPedia]
* [http://pfam.xfam.org/family/SAND Pfam]
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* [http://pfam.xfam.org/family/PF00240 Pfam]

Latest revision as of 02:15, 30 August 2017

Synonymous Genes

  • Ubiquitin <=> UBQ10, Ubiquitin, Ubiquitin C,UBQ2

Applicable Species

Species Gene Synonymous Application scenarios Publication Year
Agrostis stolonifera E3 ubiquitin-protein ligase
  • Abiotic Stresses
2015
Ammopiptanthus mongolicus Ubiquitin
  • Abiotic Stresses
2012
Anthurium andraeanum Ubiquitin-like protein 5
  • Spathe Tissue
2013
Bos indicus Ubiquitin
  • Milk Somatic Cells
2012
Bos taurus Ubiquitin carboxyl-terminal hydrolase L5
  • Viral Infection
2013
Brachiaria brizantha Ubiquitin-conjugating enzyme
  • Different Sex & Tissues
2013
Brachypodium distachyon Ubiquitin-conjugating enzyme 18
  • Different Tissues & Growth Conditions
2008
Brassica napus Ubiquitin-conjugating enzyme 21
  • Abiotic & Biotic Stress
2014
Brassica oleracea Ubiquitin
  • Abiotic Stresses
2014
Brassica rapa subsp. pekinensis Ubiquitin-conjugating enzyme 30
  • Different Developmental Stages & Biotic Stress
2012
Camellia sinensis Ubiquitin-conjugating enzyme
  • Various Experimental Treatments
2014
Capsicum annuum Ubiquitin-conjugating protein
  • Different Tissues & Abiotic Stress & Hormonal Treatment
2011
Coffea arabica L. Polyubiquitin 10
  • Abiotic Stress
2013
Coffea arabica L. Ubiquitin
  • Different Genotypes & Abiotic Stress
2012
Corchorus capsularis Ubiquitin-conjugating enzyme like protein, Ubiquitin extension protein
  • Different Tissues & Abiotic Stress
2015
Cucumis melo Ubiquitin extension protein
  • Abiotic Stress Conditions
2014
Cucumis sativus Ubiquitin extension protein
  • Different Tissues & Hormones Treatment & abiotic stresses
2010
Cynodon dactylon E3 ubiquitin-protein ligase
  • Abiotic Stress
2014
Danio rerio Danio rerio ubiquitin-conjugating enzyme E2A (ube2a)
  • Different Developmental Stages & Tissues & Abiotic Stress
2016
Dimocarpus longan Ubiquitin
  • Somatic Embryogenesis
2010
Eremosparton songoricum Ubiquitin
  • Different Tissues & Abiotic Stress
2012
Eucalyptus globulus Ubiquitin C
  • Cold Acclimation
2010
Eucalyptus grandis Polyubiquitin
  • In Vitro Adventitious Rooting
2010
Gadus morhua Ubiquitin
  • Different Tissues
2008
Gossypium hirsutum Ubiquitin extension protein 7
  • Abiotic Stress
2013
Gossypium hirsutum Ubiquitin extension protein
  • Fiber Development & Somatic Embryogenesis
2007
Gossypium hirsutum Ubiquilin
  • Different Developmental Stages & Tissues
2010
Hevea brasiliensis Ubiquitin-conjugating enzyme E2
  • Different Genotypes & Abiotic Stress
2011
Hippoglossus hippoglossus Ubiquitin-conjugating enzyme E2L 3
  • Different Development & Tissues
2010
Homo sapiens Ubiquitin C
  • Hepatocellular Carcinoma
2008
Hordeum vulgare Ubiquitin
  • Different Developmental stages
2012
Hyriopsis cumingii Ubiquitin
  • During Biomineralization
2014
Ipomoea batatas Ubiquitin extension protein
  • Abiotic Stress
2012
Lilium davidii Ubiquitin
  • Different Experimental Conditions
2015
Litsea cubeba Ubiquitin-conjugating enzyme
  • Different Developmental Stages & Tissues
2013
Lolium spp Ubiquitin
  • Resistant to Acetolactate-Synthase Inhibitors
2013
Medicago sativa Ubiquitin protein ligase 2a
  • Different Environmental & Developmental Regulation
2015
Musa acuminata Ubiquitin2
  • Different Experimental Conditions
2011
Nicotiana tabacum Ubiquitin-conjugating enzyme E2
  • Different Developmental Stages & Abiotic stress
2010
Octopus vulgaris Ubiquitin
  • Brain
2009
Oreochromis niloticus Ubiquitin-conjugating enzyme
  • Different Tissues & Bacterial Infection
2013
Paeonia suffruticosa Ubiquitin conjugating enzyme
  • Flower Development & Different Cultivars
2016
Patinopecten yessoensis ubiquitin
  • Different Tissues & Developmental Stages
2013
Pennisetum glaucum Ubiquitin-conjugating enzyme E2
  • Abiotic Stress
2016
Pennisetum glaucum Ubiquitin-conjugating enzyme
  • Different Tissues & Genotypes
2015
Peucedanum praeruptorum Ubiquitin-conjugating enzyme 9
  • Abiotic Stresses & Hormone Treatment & Different Tissues
2016
Phytophthora parasitica Ubiquitin-conjugating enzyme
  • Different Developmental Stages
2006
Pinus massoniana Polyubiquitin 11
  • Different Tissues & Floral Organ Development & Abiotic Stress
2016
Platycladus orientalis Ubiquitin 10
  • Different Tissues & Abiotic Stress
2012
Plukenetia volubilis Ubiquitin-conjugating enzyme
  • Different Developmental Stages & Tissues
2015
Posidonia oceanica Ubiquitin-conjugating enzyme, Ubiquitin
  • Abiotic Stress
2012
Pyropia yezoensis Ubiquitin
  • Different Developmental Stages & Abiotic Stress
2014
Rosa hybrida Ubiquitin conjugating protein
  • Different Genotypes & Tissues & Abiotic Stress
2011
Saccharomyces cerevisiae E2 ubiquitin-conjugating protein
  • Various Physiological States
2009
Salicornia europaea Polyubiquitin, Ubiquitin-conjugating enzyme
  • Abiotic Stress
2014
Salvia miltiorrhiza Ubiquitin protein
  • Different Tissues
2010
Sedum alfredii Ubiquitin conjugating enzyme 9
  • Sedum alfredii
2013
Sesamum indicum Ubiquitin 6
  • Different Developmental Stages & Abiotic Stress
2013
Solanum lycopersicum Ubiquitin
  • Viral Infection
2010
Solanum tuberosum ubiquitin-specific protease 22
  • Parasitic Infection
2013
Spodoptera litura Ubiquinol-cytochrome c reductase
  • Abiotic & Biotic treatments
2013
Stipa grandis Ubiquitin-conjugating enzyme 15, Ubiquitin-conjugating enzyme E2-17, Ubiquitin-conjugating enzyme E2 2
  • Abiotic Stress
2017
Sus scrofa Poly-ubiquitin
  • Oocytes & Preimplantation Embryos
2007
Trifolium pratense Ubiquitin-conjugating enzyme E2
  • Different Tissues
2012
Vernicia fordii Ubiquitin
  • Seed Development
2012
Vitis vinifera Ubiquitin-conjugating enzyme
  • Mycotic Infection
2013

Featured Sequence

The Sequence of Homo sapiens Ubiquitin is displayed as example.

000001 CCCGCTGCTC ATAAGACTCG GCCTTAGAAC CCCAGTATCA GCAGAAGGAC ATTTTAGGAC GGGACTTGGG 000070
000071 TGACTCTAGG GCACTGGTTT TCTTTCCAGA GAGCGGAACA GGCGAGGAAA AGTAGTCCCT TCTCGGCGAT 000140
000141 TCTGCGGAGG GATCTCCGTG GGGCGGTGAA CGCCGATGAT TATATAAGGA CGCGCCGGGT GTGGCACAGC 000210
000211 TAGTTCCGTC GCAGCCGGGA TTTGGGTCGC AGTTCTTGTT TGTGGATCGC TGTGATCGTC ACTTGACAAT 000280
000281 GCAGATCTTC GTGAAGACTC TGACTGGTAA GACCATCACC CTCGAGGTTG AGCCCAGTGA CACCATCGAG 000350
000351 AATGTCAAGG CAAAGATCCA AGATAAGGAA GGCATCCCTC CTGACCAGCA GAGGCTGATC TTTGCTGGAA 000420
000421 AACAGCTGGA AGATGGGCGC ACCCTGTCTG ACTACAACAT CCAGAAAGAG TCCACCCTGC ACCTGGTGCT 000490
000491 CCGTCTCAGA GGTGGGATGC AAATCTTCGT GAAGACACTC ACTGGCAAGA CCATCACCCT TGAGGTCGAG 000560
000561 CCCAGTGACA CCATCGAGAA CGTCAAAGCA AAGATCCAGG ACAAGGAAGG CATTCCTCCT GACCAGCAGA 000630
000631 GGTTGATCTT TGCCGGAAAG CAGCTGGAAG ATGGGCGCAC CCTGTCTGAC TACAACATCC AGAAAGAGTC 000700
000701 TACCCTGCAC CTGGTGCTCC GTCTCAGAGG TGGGATGCAG ATCTTCGTGA AGACCCTGAC TGGTAAGACC 000770
000771 ATCACCCTCG AGGTGGAGCC CAGTGACACC ATCGAGAATG TCAAGGCAAA GATCCAAGAT AAGGAAGGCA 000840
000841 TTCCTTCTGA TCAGCAGAGG TTGATCTTTG CCGGAAAACA GCTGGAAGAT GGTCGTACCC TGTCTGACTA 000910
000911 CAACATCCAG AAAGAGTCCA CCTTGCACCT GGTACTCCGT CTCAGAGGTG GGATGCAAAT CTTCGTGAAG 000980
000981 ACACTCACTG GCAAGACCAT CACCCTTGAG GTCGAGCCCA GTGACACTAT CGAGAACGTC AAAGCAAAGA 001050
001051 TCCAAGACAA GGAAGGCATT CCTCCTGACC AGCAGAGGTT GATCTTTGCC GGAAAGCAGC TGGAAGATGG 001120
001121 GCGCACCCTG TCTGACTACA ACATCCAGAA AGAGTCTACC CTGCACCTGG TGCTCCGTCT CAGAGGTGGG 001190
001191 ATGCAGATCT TCGTGAAGAC CCTGACTGGT AAGACCATCA CTCTCGAAGT GGAGCCGAGT GACACCATTG 001260
001261 AGAATGTCAA GGCAAAGATC CAAGACAAGG AAGGCATCCC TCCTGACCAG CAGAGGTTGA TCTTTGCCGG 001330
001331 AAAACAGCTG GAAGATGGTC GTACCCTGTC TGACTACAAC ATCCAGAAAG AGTCCACCTT GCACCTGGTG 001400
001401 CTCCGTCTCA GAGGTGGGAT GCAGATCTTC GTGAAGACCC TGACTGGTAA GACCATCACT CTCGAGGTGG 001470
001471 AGCCGAGTGA CACCATTGAG AATGTCAAGG CAAAGATCCA AGACAAGGAA GGCATCCCTC CTGACCAGCA 001540
001541 GAGGTTGATC TTTGCTGGGA AACAGCTGGA AGATGGACGC ACCCTGTCTG ACTACAACAT CCAGAAAGAG 001610
001611 TCCACCCTGC ACCTGGTGCT CCGTCTTAGA GGTGGGATGC AGATCTTCGT GAAGACCCTG ACTGGTAAGA 001680
001681 CCATCACTCT CGAAGTGGAG CCGAGTGACA CCATTGAGAA TGTCAAGGCA AAGATCCAAG ACAAGGAAGG 001750
001751 CATCCCTCCT GACCAGCAGA GGTTGATCTT TGCTGGGAAA CAGCTGGAAG ATGGACGCAC CCTGTCTGAC 001820
001821 TACAACATCC AGAAAGAGTC CACCCTGCAC CTGGTGCTCC GTCTTAGAGG TGGGATGCAG ATCTTCGTGA 001890
001891 AGACCCTGAC TGGTAAGACC ATCACTCTCG AAGTGGAGCC GAGTGACACC ATTGAGAATG TCAAGGCAAA 001960
001961 GATCCAAGAC AAGGAAGGCA TCCCTCCTGA CCAGCAGAGG TTGATCTTTG CTGGGAAACA GCTGGAAGAT 002030
002031 GGACGCACCC TGTCTGACTA CAACATCCAG AAAGAGTCCA CCCTGCACCT GGTGCTCCGT CTCAGAGGTG 002100
002101 GGATGCAAAT CTTCGTGAAG ACCCTGACTG GTAAGACCAT CACCCTCGAG GTGGAGCCCA GTGACACCAT 002170
002171 CGAGAATGTC AAGGCAAAGA TCCAAGATAA GGAAGGCATC CCTCCTGATC AGCAGAGGTT GATCTTTGCT 002240
002241 GGGAAACAGC TGGAAGATGG ACGCACCCTG TCTGACTACA ACATCCAGAA AGAGTCCACT CTGCACTTGG 002310
002311 TCCTGCGCTT GAGGGGGGGT GTCTAAGTTT CCCCTTTTAA GGTTTCAACA AATTTCATTG CACTTTCCTT 002380
002381 TCAATAAAGT TGTTGCATTC CCAAAAAAAA AAAAAAAA

Conserved Domains

The Conserved domains of Homo sapiens Ubiquitin is displayed as example.

Ubiquitin.png

External Links