Description
- Cotton (Gossypium hirsutum L.) is the single most important spinning fiber that has economic significance worldwide. Cotton is one of the most value-added crops and an excellent model system for the analysis of polyploidization and cell development.
- It is one of the most important cash crops that provide fiber to the textile industries around the world. According to the rough estimation regarding the world production of cotton, 80% comes from Brazil, China, India, Pakistan, Turkey, USA, and Uzbekistan.
- This crop contributes a major portion to the gross national product (GNP) of many countries[1] [2] [3].
Abiotic Stress
Reference Genes
| Gene Symbol
|
Gene Name
|
Application Scope
|
Accession Number
|
Primer
|
Size [bp]
|
Tm [℃]
|
Detection
|
| GhUBQ7[1]
|
ubiquitin extension protein 7
|
- Leaves & roots under salt stress and drought stress
|
DQ116441
|
- F:GAATGTGGCGCCGGGACCTTC
- R:ACTCAATCCCCACCAGCCTTCTGG
|
101
|
60
|
TaqMan
|
| GhGAPDH[1]
|
glyceraldehyde-3-phosphate dehydroge- nase C subunit
|
- Leaves & roots under salt stress and drought stress
|
FJ415206
|
- F:TGATGCCAAGGCTGGAATTGCTT
- R:GTGTCGGATCAAGTCGATAACACGG
|
106
|
60
|
TaqMan
|
| GhEF1A8[1]
|
translation elongation factor 1A-8
|
- Leaves & roots under salt stress and drought stress
|
DQ174257
|
- F:TGAGACAGACTGTTGCTGTTGGTG
- R:ACCAAAGTTCACTTGCCACCCTTC
|
109
|
60
|
TaqMan
|
| GhTUA10[1]
|
alpha-tubulin 10
|
- Roots under salt stress
- Leaves & roots under drought stress
|
FJ594490
|
- F:CACGTGAAGATCTCGCTGCCCT
- R:ACGGTACATCCCTCAATACTCCTCC
|
104
|
60
|
TaqMan
|
| GhCYP1[1]
|
cydophilin 1
|
- Roots under drought stress
|
GQ292530
|
- F:CACCATGGCCTCAAATCCCAAGGT
- R:CTCCGCAGTGCGAGGAGTGC
|
109
|
60
|
TaqMan
|
Moleculer Types
Evaluation Methods
Contact
- Name: Baohong Zhang
- Email: zhangb@ecu.edu
- Institution: Division of Biochemistry, Indian Veterinary Research Institute, Izatnagar, 243122, Bareilly, U.P., India
Citation Statistics
Cited by 31 (Based on Google Scholar [2017-06-16])
Fiber Development & Somatic Embryogenesis
Reference Genes
| Gene Symbol
|
Gene Name
|
Application Scope
|
Accession Number
|
Primer
|
Size [bp]
|
Tm [℃]
|
Detection
|
| Histone3[2]
|
histone 3
|
- fiber development and somatic embryogenesis
|
AF024716
|
- F:TCAAGACTGATTTGCGTTTCCA
- R:GCGCAAAGGTTGGTGTCTTC
|
100
|
60
|
SYBR
|
| UBQ7[2]
|
ubiquitin extension protein
|
- fiber development and somatic embryogenesis
|
DQ116441'
|
- F:GAAGGCATTCCACCTGACCAAC
- R:CTTGACCTTCTTCTTCTTGTGCTTG
|
198
|
60
|
SYBR
|
| Gbpolyubiquitin-1[2]
|
fiber polyubiquitin
|
- fiber development and somatic embryogenesis
|
AY375335
|
- F:AGCTCGGATACGATTGATAACG
- R:GAAGACGAAGAACAAGGGGAAG
|
166
|
60
|
SYBR
|
Moleculer Type
Evaluation Methods
Contact
- Name: ZHANG XianLong
- Email: xlzhang@mail.hzau.edu.cn
- Institution: National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China
References
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5
Wang M, Wang Q, Zhang B. Evaluation and selection of reliable reference genes for gene expression under abiotic stress in cotton (Gossypium hirsutum L.)[J]. Gene, 2013, 530(1): 44-50.
- ↑ 2.0 2.1 2.2 2.3
Yan R, Liang C, Meng Z, Malik W, Zhu T, Zong X, Guo S, Zhang R. Progress in genome sequencing will accelerate molecular breeding in cotton (Gossypium spp.).
- ↑
Biotech. 2016 Dec;6(2):217. doi: 10.1007/s13205-016-0534-3. Epub 2016 Oct 7. Review. PubMed PMID: 28330289; PubMed Central PMCID: PMC5055485.
