Difference between revisions of "Mus musculus"
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+ | =='''Description'''== | ||
+ | [[File:Mus musculus.png|right|200px|link=Mus musculus]] | ||
+ | * '''''Mus musculus''''' is a small mammal of the order Rodentia, characteristically having a pointed snout, small rounded ears, and a long naked or almost hairless tail. It is one of the most numerous species of the genus Mus. Although a wild animal, the house mouse mainly lives in association with humans [https://en.wikipedia.org/wiki/House_mouse (Modified from Wikipedia)]. | ||
+ | * <font color=blue>'''Common Name:'''</font> '''Mouse''' | ||
+ | * [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=10090 <font color=blue>'''NCBI Taxonomy'''</font>] | ||
+ | |||
=='''''Dextran Sodium Sulfate Experimental Colitis'''''== | =='''''Dextran Sodium Sulfate Experimental Colitis'''''== | ||
− | === | + | ===Internal Control Genes=== |
{|class="wikitable sortable" style="font-size:10pt; width:100%" | {|class="wikitable sortable" style="font-size:10pt; width:100%" | ||
|- | |- | ||
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|} | |} | ||
− | === | + | ===Molecular Types=== |
* mRNA | * mRNA | ||
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*'''Institution''': Immunology, University of Manitoba, Winnipeg, MB, Canada | *'''Institution''': Immunology, University of Manitoba, Winnipeg, MB, Canada | ||
===Citation Statistics=== | ===Citation Statistics=== | ||
− | Cited by '''3''' (Based on Google Scholar [2017- | + | Cited by [https://scholar.google.com/scholar?cites=15094739600394943508&as_sdt=2005&sciodt=0,5&hl=en '''3''' ](Based on Google Scholar [2017-09-01]) |
=='''''Mammary Glands'''''== | =='''''Mammary Glands'''''== | ||
− | === | + | ===Internal Control Genes=== |
{|class="wikitable sortable" style="font-size:10pt;width:100%;" | {|class="wikitable sortable" style="font-size:10pt;width:100%;" | ||
|- | |- | ||
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|align="center"| Hypoxanthine guanine phosphoribosyl transferase | |align="center"| Hypoxanthine guanine phosphoribosyl transferase | ||
| | | | ||
− | * | + | * Mouse mammary glands |
|align="center"| [https://www.ncbi.nlm.nih.gov/nuccore/NM_013556 '''NM_013556'''] | |align="center"| [https://www.ncbi.nlm.nih.gov/nuccore/NM_013556 '''NM_013556'''] | ||
|nowrap style="font-size:9pt"| | |nowrap style="font-size:9pt"| | ||
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|align="center"| Ribosomal protein L13A | |align="center"| Ribosomal protein L13A | ||
| | | | ||
− | * | + | * Mouse mammary glands |
|align="center"| [https://www.ncbi.nlm.nih.gov/nuccore/NM_009438 '''NM_009438'''] | |align="center"| [https://www.ncbi.nlm.nih.gov/nuccore/NM_009438 '''NM_009438'''] | ||
|nowrap style="font-size:9pt"| | |nowrap style="font-size:9pt"| | ||
Line 92: | Line 98: | ||
|align="center"| Glyceraldehyde-3-phosphate dehydrogenase | |align="center"| Glyceraldehyde-3-phosphate dehydrogenase | ||
| | | | ||
− | * | + | * Mouse mammary glands |
|align="center"| [https://www.ncbi.nlm.nih.gov/nuccore/NM_008084 '''NM_008084'''] | |align="center"| [https://www.ncbi.nlm.nih.gov/nuccore/NM_008084 '''NM_008084'''] | ||
|nowrap style="font-size:9pt"| | |nowrap style="font-size:9pt"| | ||
Line 102: | Line 108: | ||
|} | |} | ||
− | === | + | ===Molecular Types=== |
* mRNA | * mRNA | ||
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*'''Institution''': College of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou, China | *'''Institution''': College of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou, China | ||
===Citation Statistics=== | ===Citation Statistics=== | ||
− | Cited by '''11''' (Based on Google Scholar [2017- | + | Cited by [https://scholar.google.com/scholar?cites=3139211935715979100&as_sdt=2005&sciodt=0,5&hl=en '''11'''] (Based on Google Scholar [2017-09-01]) |
=='''''Uterus in the Peri-Implantation Period'''''== | =='''''Uterus in the Peri-Implantation Period'''''== | ||
− | === | + | ===Internal Control Genes=== |
{|class="wikitable sortable" style="font-size:10pt; width:100%" | {|class="wikitable sortable" style="font-size:10pt; width:100%" | ||
|- | |- | ||
Line 157: | Line 163: | ||
|} | |} | ||
− | === | + | ===Molecular Types=== |
* mRNA | * mRNA | ||
Line 170: | Line 176: | ||
*'''Institution''': College of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi, China | *'''Institution''': College of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi, China | ||
===Citation Statistics=== | ===Citation Statistics=== | ||
− | Cited by '''28''' (Based on Google Scholar [2017- | + | Cited by [https://scholar.google.com/scholar?cites=1151953663364672682&as_sdt=2005&sciodt=0,5&hl=en '''28'''] (Based on Google Scholar [2017-09-01]) |
=='''''Different Tissues & Ageing'''''== | =='''''Different Tissues & Ageing'''''== | ||
− | === | + | ===Internal Control Genes=== |
{|class="wikitable sortable" style="font-size:10pt; width:100%" | {|class="wikitable sortable" style="font-size:10pt; width:100%" | ||
|- | |- | ||
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|- | |- | ||
|align="center"| Ppib<ref name="ref4"/> | |align="center"| Ppib<ref name="ref4"/> | ||
− | |align="center"| Peptidylprolyl isomerase B | + | |align="center"| Peptidylprolyl isomerase (Cyclophilin) B |
| | | | ||
*Striatum during ageing | *Striatum during ageing | ||
Line 240: | Line 246: | ||
|} | |} | ||
− | === | + | ===Molecular Types=== |
* mRNA | * mRNA | ||
Line 252: | Line 258: | ||
*'''Institution''': INSERM, INSERM U919, Serine Proteases and Pathophysiology of the Neurovascular Unit, GIP CYCERON, University Caen Basse Normandie, boulevard Becquerel, 14074 Caen, France | *'''Institution''': INSERM, INSERM U919, Serine Proteases and Pathophysiology of the Neurovascular Unit, GIP CYCERON, University Caen Basse Normandie, boulevard Becquerel, 14074 Caen, France | ||
===Citation Statistics=== | ===Citation Statistics=== | ||
− | Cited by ''' | + | Cited by [https://scholar.google.com/scholar?cites=1382777012639468795&as_sdt=2005&sciodt=0,5&hl=en '''6'''] (Based on Google Scholar [2017-09-01]) |
=='''''Lung Development'''''== | =='''''Lung Development'''''== | ||
− | === | + | ===Internal Control Genes=== |
{|class="wikitable sortable" style="font-size:10pt; width:100%" | {|class="wikitable sortable" style="font-size:10pt; width:100%" | ||
|- | |- | ||
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|align="center"| Alpha 1a tubulin | |align="center"| Alpha 1a tubulin | ||
| | | | ||
− | * | + | *Different stages of lung development |
|align="center"| [https://www.ncbi.nlm.nih.gov/nuccore/NM_011653 '''NM_011653 '''] | |align="center"| [https://www.ncbi.nlm.nih.gov/nuccore/NM_011653 '''NM_011653 '''] | ||
|nowrap style="font-size:9pt"| | |nowrap style="font-size:9pt"| | ||
Line 280: | Line 286: | ||
|} | |} | ||
− | === | + | ===Molecular Types=== |
* mRNA | * mRNA | ||
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*'''Institution''': LOEWE Research Group Lung Cancer Epigenetic, Max-Planck-Institute for Heart and Lung Research, Parkstraße 1, 61231 Bad Nauheim, Germany | *'''Institution''': LOEWE Research Group Lung Cancer Epigenetic, Max-Planck-Institute for Heart and Lung Research, Parkstraße 1, 61231 Bad Nauheim, Germany | ||
===Citation Statistics=== | ===Citation Statistics=== | ||
− | Cited by '''7''' (Based on Google Scholar [2017- | + | Cited by [https://scholar.google.com/scholar?cites=17284368679653769355&as_sdt=2005&sciodt=0,5&hl=en '''7'''] (Based on Google Scholar [2017-09-01]) |
=='''''Epithelial & Nonepithelial Cells'''''== | =='''''Epithelial & Nonepithelial Cells'''''== | ||
− | === | + | ===Internal Control Genes=== |
{|class="wikitable sortable" style="font-size:10pt; width:100%" | {|class="wikitable sortable" style="font-size:10pt; width:100%" | ||
|- | |- | ||
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|align="center"| Beta-glucuronidase | |align="center"| Beta-glucuronidase | ||
| | | | ||
− | * | + | * Eepithelial cells isolated from the mouse intestine |
+ | * Eepithelial cells isolated the IEC6 cell line | ||
|align="center"| [https://www.ncbi.nlm.nih.gov/nuccore/NM_010368 '''NM_010368'''] | |align="center"| [https://www.ncbi.nlm.nih.gov/nuccore/NM_010368 '''NM_010368'''] | ||
|nowrap style="font-size:9pt"| | |nowrap style="font-size:9pt"| | ||
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|- | |- | ||
|align="center"| TBP<ref name="ref6"/> | |align="center"| TBP<ref name="ref6"/> | ||
− | |align="center"| | + | |align="center"| TATA-box binding protein |
| | | | ||
− | * | + | * Eepithelial cells isolated from the mouse intestine |
+ | * Eepithelial cells isolated the IEC6 cell line | ||
|align="center"| [https://www.ncbi.nlm.nih.gov/nuccore/NM_008907 '''NM_008907'''] | |align="center"| [https://www.ncbi.nlm.nih.gov/nuccore/NM_008907 '''NM_008907'''] | ||
|nowrap style="font-size:9pt"| | |nowrap style="font-size:9pt"| | ||
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|align="center"| SYBR | |align="center"| SYBR | ||
|} | |} | ||
− | === | + | |
+ | ===Molecular Types=== | ||
* mRNA | * mRNA | ||
Line 342: | Line 351: | ||
*'''Institution''': Institute of Combined Injury, State Key Laboratory of Trauma, Burns and Combined Injury, College of Preventive Medicine, Third Military Medical University, 30 Gaotanyan Road, Shapingba District, Chongqing 400038, China | *'''Institution''': Institute of Combined Injury, State Key Laboratory of Trauma, Burns and Combined Injury, College of Preventive Medicine, Third Military Medical University, 30 Gaotanyan Road, Shapingba District, Chongqing 400038, China | ||
===Citation Statistics=== | ===Citation Statistics=== | ||
− | Cited by ''' | + | Cited by [https://scholar.google.com/scholar?cites=15259891202787233691&as_sdt=2005&sciodt=0,5&hl=en '''55'''] (Based on Google Scholar [2017-09-01]) |
=='''''Preimplantation Embryos'''''== | =='''''Preimplantation Embryos'''''== | ||
− | === | + | ===Internal Control Genes=== |
{|class="wikitable sortable" style="font-size:10pt; width:100%" | {|class="wikitable sortable" style="font-size:10pt; width:100%" | ||
|- | |- | ||
Line 451: | Line 460: | ||
|} | |} | ||
− | === | + | ===Molecular Types=== |
* mRNA | * mRNA | ||
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*'''Institution''': Department of Animal Biotechnology, KonKuk University, Seoul 143-701, Republic of Korea | *'''Institution''': Department of Animal Biotechnology, KonKuk University, Seoul 143-701, Republic of Korea | ||
===Citation Statistics=== | ===Citation Statistics=== | ||
− | Cited by '''4''' (Based on Google Scholar [2017- | + | Cited by [https://scholar.google.com/scholar?cites=3344230699377018626&as_sdt=2005&sciodt=0,5&hl=en '''4'''] (Based on Google Scholar [2017-09-01]) |
− | ==''''' | + | =='''''Embryonic Stem Cells'''''== |
− | === | + | ===Internal Control Genes=== |
{|class="wikitable sortable" style="font-size:10pt; width:100%" | {|class="wikitable sortable" style="font-size:10pt; width:100%" | ||
|- | |- | ||
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|- | |- | ||
|align="center"| Pgk1<ref name="ref8"/> | |align="center"| Pgk1<ref name="ref8"/> | ||
− | |align="center"| | + | |align="center"| Phosphoglycerate kinase 1 |
| | | | ||
− | * | + | * ES, TS and XEN stem cells |
− | * | + | * In vitro differentiation of embryonic and trophectoderm stem cells |
|align="center"| [https://www.ncbi.nlm.nih.gov/nuccore/NM_008828 '''NM_008828'''] | |align="center"| [https://www.ncbi.nlm.nih.gov/nuccore/NM_008828 '''NM_008828'''] | ||
|nowrap style="font-size:9pt"| | |nowrap style="font-size:9pt"| | ||
Line 493: | Line 502: | ||
|align="center"| Succinate dehydrogenase complex, subunit A | |align="center"| Succinate dehydrogenase complex, subunit A | ||
| | | | ||
− | * | + | * ES, TS and XEN stem cells |
− | * | + | * In vitro differentiation of embryonic and trophectoderm stem cells |
|align="center"| [https://www.ncbi.nlm.nih.gov/nuccore/BC011301 '''BC011301'''] | |align="center"| [https://www.ncbi.nlm.nih.gov/nuccore/BC011301 '''BC011301'''] | ||
|nowrap style="font-size:9pt"| | |nowrap style="font-size:9pt"| | ||
Line 506: | Line 515: | ||
|align="center"| TATA box binding protein | |align="center"| TATA box binding protein | ||
| | | | ||
− | * | + | * ES, TS and XEN stem cells |
− | * | + | * In vitro differentiation of embryonic and trophectoderm stem cells |
|align="center"| [https://www.ncbi.nlm.nih.gov/nuccore/NM_013684 '''NM_013684'''] | |align="center"| [https://www.ncbi.nlm.nih.gov/nuccore/NM_013684 '''NM_013684'''] | ||
|nowrap style="font-size:9pt"| | |nowrap style="font-size:9pt"| | ||
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|align="center"| Tyrosine 3-monooxygenase /tryptophan 5-monooxygenase activation protein, zeta polypeptide | |align="center"| Tyrosine 3-monooxygenase /tryptophan 5-monooxygenase activation protein, zeta polypeptide | ||
| | | | ||
− | * | + | * In vitro differentiation of embryonic and trophectoderm stem cells |
|align="center"| [https://www.ncbi.nlm.nih.gov/nuccore/NM_013684 '''NM_013684'''] | |align="center"| [https://www.ncbi.nlm.nih.gov/nuccore/NM_013684 '''NM_013684'''] | ||
|nowrap style="font-size:9pt"| | |nowrap style="font-size:9pt"| | ||
Line 529: | Line 538: | ||
|- | |- | ||
|align="center"| Hk2<ref name="ref8"/> | |align="center"| Hk2<ref name="ref8"/> | ||
− | |align="center"| | + | |align="center"| Hexokinase 2 |
| | | | ||
− | * | + | * In vitro differentiation of embryonic and trophectoderm stem cells |
|align="center"| [https://www.ncbi.nlm.nih.gov/nuccore/NM_011740 '''NM_011740'''] | |align="center"| [https://www.ncbi.nlm.nih.gov/nuccore/NM_011740 '''NM_011740'''] | ||
|nowrap style="font-size:9pt"| | |nowrap style="font-size:9pt"| | ||
Line 540: | Line 549: | ||
|align="center"| SYBR | |align="center"| SYBR | ||
|} | |} | ||
− | === | + | |
+ | ===Molecular Types=== | ||
* mRNA | * mRNA | ||
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*'''Institution''': College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, Texas, United States of America | *'''Institution''': College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, Texas, United States of America | ||
===Citation Statistics=== | ===Citation Statistics=== | ||
− | Cited by ''' | + | Cited by [https://scholar.google.com/scholar?cites=10119274701109814464&as_sdt=2005&sciodt=0,5&hl=en '''42'''] (Based on Google Scholar [2017-09-01]) |
=='''''Obesity Model'''''== | =='''''Obesity Model'''''== | ||
− | === | + | ===Internal Control Genes=== |
{|class="wikitable sortable" style="font-size:10pt; width:100%" | {|class="wikitable sortable" style="font-size:10pt; width:100%" | ||
|- | |- | ||
Line 619: | Line 629: | ||
|} | |} | ||
− | === | + | ===Molecular Types=== |
* mRNA | * mRNA | ||
Line 632: | Line 642: | ||
*'''Institution''': Department of Biochemical Sciences, Charles University in Prague, Faculty of Pharmacy, Hradec Králové, Czech Republic | *'''Institution''': Department of Biochemical Sciences, Charles University in Prague, Faculty of Pharmacy, Hradec Králové, Czech Republic | ||
===Citation Statistics=== | ===Citation Statistics=== | ||
− | Cited by ''' | + | Cited by [https://scholar.google.com/scholar?cites=2461273527433039566&as_sdt=2005&sciodt=0,5&hl=en '''26'''] (Based on Google Scholar [2017-09-01]) |
=='''''Testis Development'''''== | =='''''Testis Development'''''== | ||
− | === | + | ===Internal Control Genes=== |
{|class="wikitable sortable" style="font-size:10pt; width:100%" | {|class="wikitable sortable" style="font-size:10pt; width:100%" | ||
|- | |- | ||
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|- | |- | ||
|align="center"| Ppia<ref name="ref10"/> | |align="center"| Ppia<ref name="ref10"/> | ||
− | |align="center"| | + | |align="center"| Peptidylprolyl isomerase (Cyclophilin) A |
| | | | ||
* Testis development | * Testis development | ||
Line 660: | Line 670: | ||
|- | |- | ||
|align="center"| Gapdh<ref name="ref10"/> | |align="center"| Gapdh<ref name="ref10"/> | ||
− | |align="center"| | + | |align="center"| Glyceraldehyde-3-phosphate dehydrogenase |
| | | | ||
* Testis development | * Testis development | ||
Line 672: | Line 682: | ||
|- | |- | ||
|align="center"| Actb<ref name="ref10"/> | |align="center"| Actb<ref name="ref10"/> | ||
− | |align="center"| | + | |align="center"| β-Actin |
| | | | ||
* Testis development | * Testis development | ||
Line 684: | Line 694: | ||
|} | |} | ||
− | === | + | ===Molecular Types=== |
* mRNA | * mRNA | ||
Line 699: | Line 709: | ||
*'''Institution''': Department of Biochemistry and Molecular Biology, School of Preclinical Sciences, Guangxi Medical University, Nanning 530021, Guangxi, China | *'''Institution''': Department of Biochemistry and Molecular Biology, School of Preclinical Sciences, Guangxi Medical University, Nanning 530021, Guangxi, China | ||
===Citation Statistics=== | ===Citation Statistics=== | ||
− | Cited by ''' | + | Cited by [https://scholar.google.com/scholar?cites=16514510807151339812&as_sdt=2005&sciodt=0,5&hl=en '''10'''] (Based on Google Scholar [2017-09-01]) |
=='''''Intestinal Epithelial Cells'''''== | =='''''Intestinal Epithelial Cells'''''== | ||
− | === | + | ===Internal Control Genes=== |
{|class="wikitable sortable" style="font-size:10pt; width:100%" | {|class="wikitable sortable" style="font-size:10pt; width:100%" | ||
|- | |- | ||
Line 715: | Line 725: | ||
|- | |- | ||
|align="center"| Ppib<ref name="ref11"/> | |align="center"| Ppib<ref name="ref11"/> | ||
− | |align="center"| Peptidylprolyl isomerase B | + | |align="center"| Peptidylprolyl isomerase (Cyclophilin) B |
| | | | ||
* Univeral reference gene in the differentiated fraction | * Univeral reference gene in the differentiated fraction | ||
Line 727: | Line 737: | ||
|- | |- | ||
|align="center"| Ppia<ref name="ref11"/> | |align="center"| Ppia<ref name="ref11"/> | ||
− | |align="center"| Peptidyl-prolyl cis–trans isomerase A | + | |align="center"| Peptidyl-prolyl cis–trans isomerase (Cyclophilin) A |
| | | | ||
* Proliferating intestinal compartments and IEC6 cells | * Proliferating intestinal compartments and IEC6 cells | ||
Line 750: | Line 760: | ||
|align="center"| SYBR | |align="center"| SYBR | ||
|} | |} | ||
− | === | + | |
+ | ===Molecular Types=== | ||
* mRNA | * mRNA | ||
Line 762: | Line 773: | ||
*'''Institution''': Laboratoire de Génétique du Développement, Université Libre de Bruxelles, Institut de Biologie et de Médecine Moléculaires (IBMM), rue des Profs. Jeener et Brachet 12, 6041 Gosselies, Belgium | *'''Institution''': Laboratoire de Génétique du Développement, Université Libre de Bruxelles, Institut de Biologie et de Médecine Moléculaires (IBMM), rue des Profs. Jeener et Brachet 12, 6041 Gosselies, Belgium | ||
===Citation Statistics=== | ===Citation Statistics=== | ||
− | Cited by ''' | + | Cited by [https://scholar.google.com/scholar?cites=6555526528695445385&as_sdt=2005&sciodt=0,5&hl=en '''5'''] (Based on Google Scholar [2017-09-01]) |
=='''''Skeletal Muscle & Different Genotypes'''''== | =='''''Skeletal Muscle & Different Genotypes'''''== | ||
− | === | + | ===Internal Control Genes=== |
{|class="wikitable sortable" style="font-size:10pt; width:100%" | {|class="wikitable sortable" style="font-size:10pt; width:100%" | ||
|- | |- | ||
Line 792: | Line 803: | ||
|align="center"| Retention in endoplasmic reticulum 1 protein | |align="center"| Retention in endoplasmic reticulum 1 protein | ||
| | | | ||
− | *R129 strain | + | *R129 strain |
+ | *C57BL/6j strain | ||
+ | *C57BL/10 strain | ||
|align="center"| [https://www.ncbi.nlm.nih.gov/nuccore/NM_026395 '''NM_026395'''] | |align="center"| [https://www.ncbi.nlm.nih.gov/nuccore/NM_026395 '''NM_026395'''] | ||
|nowrap style="font-size:9pt"| | |nowrap style="font-size:9pt"| | ||
Line 805: | Line 818: | ||
| | | | ||
*R129 strain and Rpl7l1 | *R129 strain and Rpl7l1 | ||
− | *C57BL/6j | + | *C57BL/6j strain |
|align="center"| [https://www.ncbi.nlm.nih.gov/nuccore/NM_018860 '''NM_018860'''] | |align="center"| [https://www.ncbi.nlm.nih.gov/nuccore/NM_018860 '''NM_018860'''] | ||
|nowrap style="font-size:9pt"| | |nowrap style="font-size:9pt"| | ||
Line 817: | Line 830: | ||
|align="center"| Ribosomal protein L7-like 1 | |align="center"| Ribosomal protein L7-like 1 | ||
| | | | ||
− | *C57BL/6j strain | + | *C57BL/6j strain |
+ | *C57BL/10 strain | ||
|align="center"| [https://www.ncbi.nlm.nih.gov/nuccore/NM_025433 '''NM_025433'''] | |align="center"| [https://www.ncbi.nlm.nih.gov/nuccore/NM_025433 '''NM_025433'''] | ||
|nowrap style="font-size:9pt"| | |nowrap style="font-size:9pt"| | ||
Line 839: | Line 853: | ||
|} | |} | ||
− | === | + | ===Molecular Types=== |
* mRNA | * mRNA | ||
Line 850: | Line 864: | ||
*'''Institution''': Department of Biochemical Sciences, Charles University in Prague, Faculty of Pharmacy, Hradec Králové, Czech Republic | *'''Institution''': Department of Biochemical Sciences, Charles University in Prague, Faculty of Pharmacy, Hradec Králové, Czech Republic | ||
===Citation Statistics=== | ===Citation Statistics=== | ||
− | Cited by ''' | + | Cited by [https://scholar.google.com/scholar?cites=1062620161022216578&as_sdt=2005&sciodt=0,5&hl=en '''12'''] (Based on Google Scholar [2017-09-01]) |
=='''References'''== | =='''References'''== | ||
Line 902: | Line 916: | ||
</ref> | </ref> | ||
</references> | </references> | ||
− | + | =='''Categories'''== | |
[[Category:Animals]] | [[Category:Animals]] | ||
[[Category:mRNA]] | [[Category:mRNA]] | ||
[[Category:SYBR]] | [[Category:SYBR]] | ||
− | [[Category:18S rRNA]] [[Category:18S rRNA]] [[Category:ACT]] [[Category:ACT]] [[Category:Aldoa]] [[Category: | + | [[Category:18S rRNA]] [[Category:18S rRNA]] [[Category:ACT]] [[Category:ACT]] [[Category:Aldoa]] [[Category:B2M]] [[Category:EF1α]] [[Category:GAPDH]] [[Category:GAPDH]] [[Category:GAPDH]] [[Category:GAPDH]] [[Category:GAPDH]] [[Category:GUSB]] [[Category:Histone]] [[Category:HK]] [[Category:HPRT]] [[Category:HPRT]] [[Category:HPRT]] [[Category:PGK]] [[Category:Cyclophilin]] [[Category:Rer1]] [[Category:RPL]] [[Category:SDHA]] [[Category:SPTBN]] [[Category:TBP]] [[Category:TBP]] [[Category:TBP]] [[Category:TGFB]] [[Category:Tubulin]] [[Category:WRNIP]] [[Category:YWHAZ]] [[Category:YWHAZ]][[Category:Different Tissues]] [[Category:Animal Model]] [[Category:Ageing]] [[Category:Lung Development]] [[Category:Specific Tissue]] [[Category:Specific Cells]] [[Category:Different Genotypes]] [[Category:Pathological conditions]] |
+ | {{Template:BackToTop}} | ||
+ | |||
+ | [[Category:geNorm]] | ||
+ | [[Category:NormFinder]] | ||
+ | [[Category:BestKeeper]] | ||
+ | [[Category:Delta Ct]] | ||
+ | [[Category:RefFinder]] |
Latest revision as of 07:41, 7 September 2017
Contents
- 1 Description
- 2 Dextran Sodium Sulfate Experimental Colitis
- 3 Mammary Glands
- 4 Uterus in the Peri-Implantation Period
- 5 Different Tissues & Ageing
- 6 Lung Development
- 7 Epithelial & Nonepithelial Cells
- 8 Preimplantation Embryos
- 9 Embryonic Stem Cells
- 10 Obesity Model
- 11 Testis Development
- 12 Intestinal Epithelial Cells
- 13 Skeletal Muscle & Different Genotypes
- 14 References
- 15 Categories
Description
- Mus musculus is a small mammal of the order Rodentia, characteristically having a pointed snout, small rounded ears, and a long naked or almost hairless tail. It is one of the most numerous species of the genus Mus. Although a wild animal, the house mouse mainly lives in association with humans (Modified from Wikipedia).
- Common Name: Mouse
- NCBI Taxonomy
Dextran Sodium Sulfate Experimental Colitis
Internal Control Genes
Gene Symbol | Gene Name | Application Scope | Accession Number | Primers (5'-3') [Forward/Reverse] |
Size [bp] | Tm [℃] | Detection |
---|---|---|---|---|---|---|---|
Tbp[1] | TATA-box-binding protein |
|
NM_013684 |
|
86 | 60.8~61.3 | SYBR |
Eef2[1] | Eukaryotic Translation Elongation Factor 2 |
|
NM_007907.2 |
|
123 | 62.1~62.2 | SYBR |
Molecular Types
- mRNA
Evaluation Methods
Contact
- Name: Jean-Eric Ghia
- Email: Jean-Eric.Ghia@umanitoba.ca
- Institution: Immunology, University of Manitoba, Winnipeg, MB, Canada
Citation Statistics
Cited by 3 (Based on Google Scholar [2017-09-01])
Mammary Glands
Internal Control Genes
Gene Symbol | Gene Name | Application Scope | Accession Number | Primers (5'-3') [Forward/Reverse] |
Size [bp] | Tm [℃] | Detection |
---|---|---|---|---|---|---|---|
HPRT[2] | Hypoxanthine guanine phosphoribosyl transferase |
|
NM_013556 |
|
86 | 60 | SYBR |
RPL13A[2] | Ribosomal protein L13A |
|
NM_009438 |
|
168 | 60 | SYBR |
GAPDH[2] | Glyceraldehyde-3-phosphate dehydrogenase |
|
NM_008084 |
|
150 | 60 | SYBR |
Molecular Types
- mRNA
Evaluation Methods
Contact
- Name: Y.L. Wang
- Email: ylwang2001@yahoo.cn
- Institution: College of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou, China
Citation Statistics
Cited by 11 (Based on Google Scholar [2017-09-01])
Uterus in the Peri-Implantation Period
Internal Control Genes
Gene Symbol | Gene Name | Application Scope | Accession Number | Primers (5'-3') [Forward/Reverse] |
Size [bp] | Tm [℃] | Detection |
---|---|---|---|---|---|---|---|
RPLP0[3] | Ribosomal protein, large, P0 |
|
NM_007475 |
|
85 | 60 | SYBR |
GAPDH[3] | Glyceraldehydes-3-phosphate dehydrogenase |
|
NM_008084 |
|
186 | 60 | SYBR |
Molecular Types
- mRNA
Evaluation Methods
- geNorm method && Related Reference
- NormFinder method && Related Reference
- BestKeeper method && Related Reference
Contact
- Name: AiHua Wang
- Email: pflin2001n@163.com
- Institution: College of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi, China
Citation Statistics
Cited by 28 (Based on Google Scholar [2017-09-01])
Different Tissues & Ageing
Internal Control Genes
Gene Symbol | Gene Name | Application Scope | Accession Number | Primers (5'-3') [Forward/Reverse] |
Size [bp] | Tm [℃] | Detection |
---|---|---|---|---|---|---|---|
Rpl13a[4] | Ribosomal protein L13a |
|
NM_009438.5 |
|
96 | 60 | SYBR |
GAPDH[4] | Glyceraldehyde-3-phosphate dehydrogenase |
|
NM_008084.3 |
|
143 | 60 | SYBR |
Ppib[4] | Peptidylprolyl isomerase (Cyclophilin) B |
|
NM_011149.2 |
|
85 | 60 | SYBR |
Hprt[4] | Hypoxanthine guanine phosphoribosyl transferase |
|
NM_013556.2 |
|
121 | 60 | SYBR |
Molecular Types
- mRNA
Evaluation Methods
Contact
- Name: B.D.Roussel
- Email: broussel@cyceron.fr
- Institution: INSERM, INSERM U919, Serine Proteases and Pathophysiology of the Neurovascular Unit, GIP CYCERON, University Caen Basse Normandie, boulevard Becquerel, 14074 Caen, France
Citation Statistics
Cited by 6 (Based on Google Scholar [2017-09-01])
Lung Development
Internal Control Genes
Gene Symbol | Gene Name | Application Scope | Accession Number | Primers (5'-3') [Forward/Reverse] |
Size [bp] | Tm [℃] | Detection |
---|---|---|---|---|---|---|---|
Tuba1a[5] | Alpha 1a tubulin |
|
NM_011653 |
|
227 | 60.39~61.43 | SYBR |
Molecular Types
- mRNA
Evaluation Methods
Contact
- Name: Guillermo Barreto
- Email: guillermo.barreto@mpi-bn.mpg.de
- Institution: LOEWE Research Group Lung Cancer Epigenetic, Max-Planck-Institute for Heart and Lung Research, Parkstraße 1, 61231 Bad Nauheim, Germany
Citation Statistics
Cited by 7 (Based on Google Scholar [2017-09-01])
Epithelial & Nonepithelial Cells
Internal Control Genes
Gene Symbol | Gene Name | Application Scope | Accession Number | Primers (5'-3') [Forward/Reverse] |
Size [bp] | Tm [℃] | Detection |
---|---|---|---|---|---|---|---|
GUSB[6] | Beta-glucuronidase |
|
NM_010368 |
|
197 | 55–60 | SYBR |
TBP[6] | TATA-box binding protein |
|
NM_008907 |
|
131 | 55–60 | SYBR |
Molecular Types
- mRNA
Evaluation Methods
Contact
- Name: Yongping Su
- Email: suyp2003@yahoo.com.cn
- Institution: Institute of Combined Injury, State Key Laboratory of Trauma, Burns and Combined Injury, College of Preventive Medicine, Third Military Medical University, 30 Gaotanyan Road, Shapingba District, Chongqing 400038, China
Citation Statistics
Cited by 55 (Based on Google Scholar [2017-09-01])
Preimplantation Embryos
Internal Control Genes
Gene Symbol | Gene Name | Application Scope | Accession Number | Primers (5'-3') [Forward/Reverse] |
Size [bp] | Tm [℃] | Detection |
---|---|---|---|---|---|---|---|
h2afz[7] | H2A histone family, member Z |
|
NM_016750 |
|
89 | 60 | SYBR |
sptbn[7] | Pectrin beta, non-erythrocytic 1 |
|
NM_175836 |
|
101 | 55 | SYBR |
wrnip[7] | Werner helicase interacting protein 1 |
|
NM_030215 |
|
130 | 56 | SYBR |
ywhaz[7] | 14-3-3 protein zeta/delta (14-3-3ζ) |
|
NM_001253807 |
|
92 | 60 | SYBR |
tgfb1[7] | Transforming growth factor, beta 1 |
|
NM_011577 |
|
83 | 55 | SYBR |
18s[7] | 18S rRNA |
|
X00686 |
|
102 | 60 | SYBR |
actb[7] | β-actin |
|
NM_007393 |
|
98 | 56 | SYBR |
Molecular Types
- mRNA
Evaluation Methods
Contact
- Name: Jin-Hoi Kim
- Email: jhkim541@konkuk.ac.kr
- Institution: Department of Animal Biotechnology, KonKuk University, Seoul 143-701, Republic of Korea
Citation Statistics
Cited by 4 (Based on Google Scholar [2017-09-01])
Embryonic Stem Cells
Internal Control Genes
Gene Symbol | Gene Name | Application Scope | Accession Number | Primers (5'-3') [Forward/Reverse] |
Size [bp] | Tm [℃] | Detection |
---|---|---|---|---|---|---|---|
Pgk1[8] | Phosphoglycerate kinase 1 |
|
NM_008828 |
|
110 | 60 | SYBR |
Sdha[8] | Succinate dehydrogenase complex, subunit A |
|
BC011301 |
|
134 | 60 | SYBR |
Tbp[8] | TATA box binding protein |
|
NM_013684 |
|
127 | 60 | SYBR |
Ywhaz[8] | Tyrosine 3-monooxygenase /tryptophan 5-monooxygenase activation protein, zeta polypeptide |
|
NM_013684 |
|
88 | 60 | SYBR |
Hk2[8] | Hexokinase 2 |
|
NM_011740 |
|
251 | 60 | SYBR |
Molecular Types
- mRNA
Evaluation Methods
- geNorm method && Related Reference
- NormFinder method && Related Reference
- BestKeeper method && Related Reference
Contact
- Name: Michael C. Golding
- Email: mgolding@cvm.tamu.edu
- Institution: College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, Texas, United States of America
Citation Statistics
Cited by 42 (Based on Google Scholar [2017-09-01])
Obesity Model
Internal Control Genes
Gene Symbol | Gene Name | Application Scope | Accession Number | Primers (5'-3') [Forward/Reverse] |
Size [bp] | Tm [℃] | Detection |
---|---|---|---|---|---|---|---|
B2M[9] | Beta 2 Microglobulin |
|
NM_009735 |
|
103 | 83.5 | SYBR |
18S[9] | 18S Ribosomal RNA |
|
NR_003278 |
|
133 | 85 | SYBR |
HPRT1[9] | Hypoxanthine phosphoribosyl transferase |
|
NM_013556 |
|
167 | 81.5 | SYBR |
RPlP0[9] | Ribosomal Protein large P0 |
|
NM_007475 |
|
136 | 87.5 | SYBR |
Molecular Types
- mRNA
Evaluation Methods
- geNorm method && Related Reference
- NormFinder method && Related Reference
- BestKeeper method && Related Reference
Contact
- Name: Petra Matoušková
- Email: matousp7@faf.cuni.cz
- Institution: Department of Biochemical Sciences, Charles University in Prague, Faculty of Pharmacy, Hradec Králové, Czech Republic
Citation Statistics
Cited by 26 (Based on Google Scholar [2017-09-01])
Testis Development
Internal Control Genes
Gene Symbol | Gene Name | Application Scope | Accession Number | Primers (5'-3') [Forward/Reverse] |
Size [bp] | Tm [℃] | Detection |
---|---|---|---|---|---|---|---|
Ppia[10] | Peptidylprolyl isomerase (Cyclophilin) A |
|
NM_008907 |
|
144 | 60 | SYBR |
Gapdh[10] | Glyceraldehyde-3-phosphate dehydrogenase |
|
NM_008084 |
|
150 | 60 | SYBR |
Actb[10] | β-Actin |
|
NM_007393 |
|
171 | 60 | SYBR |
Molecular Types
- mRNA
Evaluation Methods
- geNorm method && Related Reference
- NormFinder method && Related Reference
- Comparative ΔCt method && Related Reference
- BestKeeper method && Related Reference
- Ref-Finder method && Related Reference
Contact
- Name: Wen Zhen Lin
- Email: linwenzhen@msn.com
- Institution: Department of Biochemistry and Molecular Biology, School of Preclinical Sciences, Guangxi Medical University, Nanning 530021, Guangxi, China
Citation Statistics
Cited by 10 (Based on Google Scholar [2017-09-01])
Intestinal Epithelial Cells
Internal Control Genes
Gene Symbol | Gene Name | Application Scope | Accession Number | Primers (5'-3') [Forward/Reverse] |
Size [bp] | Tm [℃] | Detection |
---|---|---|---|---|---|---|---|
Ppib[11] | Peptidylprolyl isomerase (Cyclophilin) B |
|
NM_011149.2 |
|
156 | 60 | SYBR |
Ppia[11] | Peptidyl-prolyl cis–trans isomerase (Cyclophilin) A |
|
NM_008907.1 |
|
109 | 60 | SYBR |
Gapdh[11] | Glyceraldehyde-3-phosphate dehydrogenase |
|
XM_003945995.1 |
|
152 | 60 | SYBR |
Molecular Types
- mRNA
Evaluation Methods
Contact
- Name: Maria Sirakov
- Email: maria.sirakov@ulb.ac.be
- Institution: Laboratoire de Génétique du Développement, Université Libre de Bruxelles, Institut de Biologie et de Médecine Moléculaires (IBMM), rue des Profs. Jeener et Brachet 12, 6041 Gosselies, Belgium
Citation Statistics
Cited by 5 (Based on Google Scholar [2017-09-01])
Skeletal Muscle & Different Genotypes
Internal Control Genes
Gene Symbol | Gene Name | Application Scope | Accession Number | Primers (5'-3') [Forward/Reverse] |
Size [bp] | Tm [℃] | Detection |
---|---|---|---|---|---|---|---|
Rpl27[12] | Ribosomal protein L27 |
|
NM_011289 |
|
143 | 65 | SYBR |
Rer1[12] | Retention in endoplasmic reticulum 1 protein |
|
NM_026395 |
|
137 | 62 | SYBR |
Rpl41[12] | Ribosomal protein L41 |
|
NM_018860 |
|
113 | 65 | SYBR |
Rpl7l1[12] | Ribosomal protein L7-like 1 |
|
NM_025433 |
|
110 | 65 | SYBR |
Aldoa[12] | Aldolase A, fructose-bisphosphate |
|
NM_001177307 |
|
136 | 62 | SYBR |
Molecular Types
- mRNA
Evaluation Methods
- Ref-Finder method && Related Reference
Contact
- Name: Kathryn N. North
- Email: Kathryn.north@mcri.edu.au
- Institution: Department of Biochemical Sciences, Charles University in Prague, Faculty of Pharmacy, Hradec Králové, Czech Republic
Citation Statistics
Cited by 12 (Based on Google Scholar [2017-09-01])
References
- ↑ 1.0 1.1 Eissa N, Hussein H, Wang H, et al. Stability of Reference Genes for Messenger RNA Quantification by Real-Time PCR in Mouse Dextran Sodium Sulfate Experimental Colitis[J]. PloS one, 2016, 11(5): e0156289.
- ↑ 2.0 2.1 2.2 Han L Q, Yang G Y, Zhu H S, et al. Selection and use of reference genes in mouse mammary glands[J]. Genet Mol Res, 2010, 9(1): 449-56.
- ↑ 3.0 3.1 Lin P F, Lan X L, Chen F L, et al. Reference gene selection for real-time quantitative PCR analysis of the mouse uterus in the peri-implantation period[J]. PloS one, 2013, 8(4): e62462.
- ↑ 4.0 4.1 4.2 4.3 Bruckert G, Vivien D, Docagne F, et al. Normalization of Reverse Transcription Quantitative PCR Data During Ageing in Distinct Cerebral Structures[J]. Molecular neurobiology, 2016, 53(3): 1540-1550.
- ↑ Mehta A, Dobersch S, Dammann R H, et al. Validation of Tuba1a as appropriate internal control for normalization of gene expression analysis during mouse lung development[J]. International journal of molecular sciences, 2015, 16(3): 4492-4511.
- ↑ 6.0 6.1 Wang F, Wang J, Liu D, et al. Normalizing genes for real-time polymerase chain reaction in epithelial and nonepithelial cells of mouse small intestine[J]. Analytical biochemistry, 2010, 399(2): 211-217.
- ↑ 7.0 7.1 7.2 7.3 7.4 7.5 7.6 Jeong J K, Kang M H, Gurunathan S, et al. Evaluation of reference genes in mouse preimplantation embryos for gene expression studies using real-time quantitative RT-PCR (RT-qPCR)[J]. BMC research notes, 2014, 7(1): 675.
- ↑ 8.0 8.1 8.2 8.3 8.4 Veazey K J, Golding M C. Selection of stable reference genes for quantitative rt-PCR comparisons of mouse embryonic and extra-embryonic stem cells[J]. PloS one, 2011, 6(11): e27592.
- ↑ 9.0 9.1 9.2 9.3 Matoušková P, Bártíková H, Boušová I, et al. Reference genes for real-time PCR quantification of messenger RNAs and microRNAs in mouse model of obesity[J]. PLoS One, 2014, 9(1): e86033.
- ↑ 10.0 10.1 10.2 Gong Z K, Wang S J, Huang Y Q, et al. Identification and validation of suitable reference genes for RT-qPCR analysis in mouse testis development[J]. Molecular genetics and genomics, 2014, 289(6): 1157-1169.
- ↑ 11.0 11.1 11.2 Sirakov M, Borra M, Cambuli F M, et al. Defining suitable reference genes for RT-qPCR analysis on intestinal epithelial cells[J]. Molecular biotechnology, 2013, 54(3): 930-938.
- ↑ 12.0 12.1 12.2 12.3 12.4 Thomas K C, Zheng X F, Suarez F G, et al. Evidence based selection of commonly used RT-qPCR reference genes for the analysis of mouse skeletal muscle[J]. PloS one, 2014, 9(2): e88653.
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